Evidence map›Paper›PMID 41996161›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2026

Sparse identification of nonlinear dynamics and Koopman operators with Shallow Recurrent Decoder Networks.

Mars Liyao Gao, Jan P Williams, J Nathan Kutz

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Shallow recurrent decoders for neural and behavioural dynamics.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2026
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Mars Liyao GaoPaul G. Allen School of Computer Science & Engineering, University of Washington, Seattle, WA 98195.ORCID 0000-0001-9692-4264
Jan P WilliamsDepartment of Mechanical Engineering, University of Washington, Seattle, WA 98195.
J Nathan KutzDepartment of Applied Mathematics, University of Washington, Seattle, WA 98195.ORCID 0000-0002-6004-2275

Funding

DOD | AF | AMC | AFRL | Air Force Office of Scientific Research (AFOSR) FA9550-24-1-0141National Science Foundation (NSF) 2112085
6 · The paper itself

Abstract

Modeling real-world spatiotemporal data is exceptionally difficult due to inherent high dimensionality, measurement noise, partial observations, and often expensive data collection procedures. In this paper, we present Sparse Identification of Nonlinear Dynamics with SHallow REcurrent Decoder networks (SINDy-SHRED), a method to jointly solve the sensing and model identification problems with simple implementation, efficient computation, and robust performance. SINDy-SHRED uses Gated Recurrent Units to model the temporal sequence of sparse sensor measurements along with a shallow decoder network to reconstruct the full spatiotemporal field from the latent state space. Our algorithm introduces a SINDy-based regularization for which the latent space progressively converges to a SINDy-class functional, provided the projection remains within the set. In restricting SINDy to a linear model, a Koopman-SHRED model is generated. SINDy-SHRED i) learns a symbolic and interpretable generative model of a parsimonious and low-dimensional latent space for the complex spatiotemporal dynamics, ii) discovers governing equations even for well-known physical systems, iii) achieves an observed convex loss landscape, and iv) achieves superior accuracy, data efficiency, and training cost, all with fewer model parameters, than competing state-of-the-art methods. We conduct systematic experimental studies on Partial differential equation data such as turbulent flows, real-world sensor measurements for sea surface temperature, and direct video data. The interpretable SINDy and Koopman models of latent state dynamics enable stable and accurate long-term video predictions, outperforming all current baseline deep learning models in accuracy, training cost, and data requirements, including Convolutional LSTM, PredRNN, ResNet, and SimVP.

Indexed as

deep learningdynamical systemsmachine learningmodel discoveryreduced order models

Identifiers

PMID41996161
PMCPMC13099575

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.