Evidence map›Paper›PMID 41990227›Full record

ArticleDatabase : the journal of biological databases and curation2026

Desert Plant Endophyte Genome Database: a curated repository of endophytic bacterial genomes across arid ecosystems.

Sabiha Parween, Arun Prasanna Nagarajan, Amal K Alghamdi, Abdul Aziz Eida, Feras F Lafi, Luma Albanna, Nida Salem, Barakat Abu-Irmaileh, Zaid A Pirzada, Shahid Siddique and 4 more

Abstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Sabiha ParweenDarwin 21 Desert Research Initiative, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Sciences and Technology (KAUST), Building 2, Thuwal, Makkah Province, 23955-6900, Saudi Arabia.ORCID 0000-0002-1609-8968
Arun Prasanna NagarajanDarwin 21 Desert Research Initiative, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Sciences and Technology (KAUST), Building 2, Thuwal, Makkah Province, 23955-6900, Saudi Arabia.
Amal K AlghamdiDarwin 21 Desert Research Initiative, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Sciences and Technology (KAUST), Building 2, Thuwal, Makkah Province, 23955-6900, Saudi Arabia.
Abdul Aziz EidaDarwin 21 Desert Research Initiative, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Sciences and Technology (KAUST), Building 2, Thuwal, Makkah Province, 23955-6900, Saudi Arabia.
Feras F LafiCollege of Natural and Health Sciences, Zayed University, Academic City Road, Dubai Academic City, Dubai, UAE.
Luma AlbannaDepartment of Plant Protection, School of Agriculture, The University of Jordan, Queen Rania Al Abdullah Street, Al Jubeiha District, 11942, Amman, Jordan.
Nida SalemDepartment of Plant Protection, School of Agriculture, The University of Jordan, Queen Rania Al Abdullah Street, Al Jubeiha District, 11942, Amman, Jordan.
Barakat Abu-IrmailehDepartment of Plant Protection, School of Agriculture, The University of Jordan, Queen Rania Al Abdullah Street, Al Jubeiha District, 11942, Amman, Jordan.
Zaid A PirzadaDepartment of Microbiology, University of Karachi, University Road, 75270 Karachi, Pakistan.
Shahid SiddiqueDepartment of Entomology and Nematology, University of California, One Shields Avenue, Davis, CA 95616, United States.ORCID 0000-0001-7503-4318
Ruben Garrido-OterDepartment of Plant-Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, 50829 Cologne, Germany.ORCID 0000-0003-1769-892X
Paul Schulze-LefertDepartment of Plant-Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, 50829 Cologne, Germany.ORCID 0000-0002-8978-1717
Maged M SaadDarwin 21 Desert Research Initiative, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Sciences and Technology (KAUST), Building 2, Thuwal, Makkah Province, 23955-6900, Saudi Arabia.
Heribert HirtDarwin 21 Desert Research Initiative, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Sciences and Technology (KAUST), Building 2, Thuwal, Makkah Province, 23955-6900, Saudi Arabia.ORCID 0000-0003-3119-9633

Funding

KAUST BAS/1/1062-01-01
6 · The paper itself

Abstract

Microbial communities associated with desert plants play a pivotal role in enhancing host survival under extreme environmental stressors, including drought, salinity, and nutrient limitation. The Desert Plant Endophyte Microbial Collection is one of the largest curated repositories of 2500 cultivable endophytic bacteria isolated from 23 native desert plant species across Saudi Arabia, Jordan, and Pakistan. Representing a broad spectrum of arid microhabitats from inland deserts and mountain wadis to coastal mangroves and date palm oases, the collection supports integrative studies on microbial ecology and plant-microbe interactions in water-limited ecosystems. A central component of this initiative is the Desert Plant Endophyte Genome Database, which currently hosts whole-genome sequences of 534 endophytic bacterial isolates annotated with extensive ecological metadata, assembly statistics, functional traits, and host associations. The database interface provides tools for genome exploration, metadata filtering, and functional gene mining, enabling users to identify taxa and traits of agronomic interest, particularly for applications in sustainable agriculture and sustainable desert revegetation. By combining genomic, ecological, and functional data, the Desert Plant Endophyte Genome Database serves as a foundational platform for the development of targeted microbial inoculants and fosters data-driven research into desert microbiomes and plant resilience mechanisms.

Indexed as

BacteriaDatabases, GeneticDesert ClimateEcosystemEndophytesGenome, BacterialPlantsBiocuration

Identifiers

PMID41990227
PMCPMC13092982

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.