Evidence map›Paper›PMID 41986687›Full record

ArticleNature methods2026

A series of spontaneously blinking dyes for super-resolution microscopy.

Katie L Holland, Sarah E Plutkis, Brian P English, Timothy A Daugird, Abhishek Sau, Jonathan B Grimm, Qinsi Zheng, Ankith Sharma, Sandeep Dave, Anja Schmidt and 11 more

Abstract read
In one paragraph

Article in Nature methods, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Optical single-channel recording of CRAC channels with HaloTag and a CabioRxiv : the preprint server for biology · 2026
    Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Review
  11. Clustering within a single-component biomolecular condensate.bioRxiv : the preprint server for biology · 2025
    Article
  12. Article
  13. Article
  14. Experimental Approaches to Visualize Effector Protein Translocation During Host-Pathogen Interactions.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors.

Katie L Holland *Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID http://orcid.org/0009-0007-1183-195X
Sarah E Plutkis *Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.
Brian P English *Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID http://orcid.org/0000-0002-4037-6294
Timothy A Daugird *Department of Pharmacology, University of North Carolina-Chapel Hill Medical School, Chapel Hill, NC, USA.
Abhishek SauDepartment of Cell Biology and Genetics, Texas A&M University, College of Medicine, College Station, TX, USA.ORCID http://orcid.org/0000-0002-5560-5360
Jonathan B GrimmJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID http://orcid.org/0000-0003-0331-4200
Qinsi ZhengJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.
Ankith SharmaDepartment of Cell Biology and Genetics, Texas A&M University, College of Medicine, College Station, TX, USA.ORCID http://orcid.org/0000-0002-0724-5444
Sandeep DaveDepartment of Cell Biology and Genetics, Texas A&M University, College of Medicine, College Station, TX, USA.ORCID http://orcid.org/0000-0003-2832-2098
Anja SchmidtJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID http://orcid.org/0000-0002-5922-7037
Fariha RahmanLampe Joint Department of Biomedical Engineering, University of North Carolina-Chapel Hill and North Carolina State University, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0001-8014-3025
Liangqi XieJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID http://orcid.org/0000-0002-6546-9622
Peng DongJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID http://orcid.org/0000-0003-4946-1409
Ariana N TkachukJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID http://orcid.org/0000-0001-8991-9643
Timothy A BrownJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.
Robert H SingerJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.
Zhe J LiuJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID http://orcid.org/0000-0002-3592-3150
Siegfried M MusserDepartment of Cell Biology and Genetics, Texas A&M University, College of Medicine, College Station, TX, USA.ORCID http://orcid.org/0000-0002-7793-2557
Wesley R LegantDepartment of Pharmacology, University of North Carolina-Chapel Hill Medical School, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0003-1827-5371
Catherine G GalbraithDepartment of Biomedical Engineering and Knight Cancer Institute, Oregon Health and Science University, Portland, OR, USA. galbrcat@ohsu.edu.ORCID http://orcid.org/0000-0003-0203-1487
Luke D LavisJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA. lavisl@janelia.hhmi.org.ORCID http://orcid.org/0000-0002-0789-6343

Funding

Mapping Transport Pathways through Nuclear Pores using 3D Super-Resolution MicroscopyR01GM126190 · NIGMS · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI MUSSER, SIEGFRIED M · 2018 to 2025
$2.6M
Probing Biomolecular Condensates in Live Cells using Microsecond-scale Single Molecule Rotational Diffusion Microscopy (µs-SiMRoD)R21NS141768 · NINDS · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI MUSSER, SIEGFRIED M · 2024 to 2025
$419k
Howard Hughes Medical Institute (HHMI) JaneliaNIGMS NIH HHS R01 GM126190NINDS NIH HHS R21 NS141768U.S. Department of Health & Human Services | National Institutes of Health (NIH) 1DP2GM136653U.S. Department of Health & Human Services | National Institutes of Health (NIH) NS083085U.S. Department of Health & Human Services | National Institutes of Health (NIH) NS141768Welch Foundation 579662
6 · The paper itself

Abstract

Spontaneously blinking fluorophores toggle between nonfluorescent and fluorescent forms without caging groups or redox buffers, enabling super-resolution imaging. The intrinsic blinking of such dyes is governed by molecular structure and modulated by environment; there is no one-size-fits-all fluorophore suitable for every imaging context. We report dyes with tuned on:off ratios that enable single-molecule localization microscopy and super-resolution optical fluctuation imaging of biomolecular structures in vitro and in cells.

Indexed as

Fluorescent DyesSingle Molecule ImagingAnimalsHumansMicroscopy, FluorescenceFluorescent Dyes

Identifiers

PMID41986687
PMCPMC13167466

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.