Evidence map›Paper›PMID 41986331›Full record

ArticleNature communications2026

N-Glycans modulate tilting of HIV-1 envelope glycoprotein.

Mohamed Shehata, Lorenzo Casalino, Madeleine Duquette, Siyu Chen, Alex Flaherty, Patrick M Waller, Elizabeth Villa, Rommie E Amaro

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Mohamed Shehata *Department of Molecular Biology, University of California San Diego, La Jolla, CA, USA.
Lorenzo Casalino *Department of Molecular Biology, University of California San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-3581-1148
Madeleine Duquette *Department of Molecular Biology, University of California San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0009-0001-4737-542X
Siyu ChenDepartment of Molecular Biology, University of California San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-4565-4772
Alex FlahertyDepartment of Molecular Biology, University of California San Diego, La Jolla, CA, USA.
Patrick M WallerDepartment of Molecular Biology, University of California San Diego, La Jolla, CA, USA.
Elizabeth VillaDepartment of Molecular Biology, University of California San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-4677-9809
Rommie E AmaroDepartment of Molecular Biology, University of California San Diego, La Jolla, CA, USA. ramaro@ucsd.edu.ORCID http://orcid.org/0000-0002-9275-9553

Funding

CHEETAH Center for the Structural Biology of HIV Infection, Restriction, and Viral DynamicsU54AI170856 · NIAID · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI WALTHER H MOTHES · 2022 to 2026
$34.4M
Pathways in Biological Sciences Training ProgramT32GM133351 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Matthew Daugherty, Randolph Y. Hampton · 2020 to 2026
$9.9M
Multiscale Computational Microscopy of HIV-1R01AI179188 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Rommie E Amaro · 2023 to 2026
$2.7M
NIAID NIH HHS R01 AI179188NIAID NIH HHS U54 AI170856NIGMS NIH HHS T32 GM133351
6 · The paper itself

Abstract

Human immunodeficiency virus-1 (HIV-1) remains a global health crisis, with over 40 million people living with the virus and no effective vaccine available. Central to HIV infection and immune evasion is the envelope glycoprotein (Env), a heavily glycosylated class I fusion protein that mediates viral entry and is the sole immunogenic target. Despite the recent advancements provided by imaging techniques, the characterization of Env's structure and dynamics within its native membrane environment remains incomplete. Here, we present microsecond-long, all-atom molecular dynamics simulations of the full-length, glycosylated Env glycoprotein embedded in a biologically relevant lipid bilayer. Our simulations, corroborated by cryo-electron tomography, reveal a pronounced tilting motion of Env relative to the membrane. Importantly, we identify a critical role for N-linked glycans at N88 and N611 in modulating the transition to tilted conformations. Alongside illuminating the sites of vulnerability within the glycan shield, the results presented here underscore Env tilting dynamics as a feature that can be leveraged in immunogen design.

Indexed as

env Gene Products, Human Immunodeficiency VirusHIV-1HIV Envelope Protein gp120PolysaccharidesCryoelectron MicroscopyGlycosylationHumansLipid BilayersMolecular Dynamics SimulationProtein Conformationenv Gene Products, Human Immunodeficiency VirusHIV Envelope Protein gp120Lipid BilayersPolysaccharides

Identifiers

PMID41986331
PMCPMC13254402

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.