Evidence map›Paper›PMID 41983103›Full record

ReviewClinical & translational immunology2026

Spatial omics for profiling the dynamic tumor microenvironment.

Hao Nguyen, Merrin Mary Eapen, Quan Nguyen, Ankur Sharma

Abstract readReview
In one paragraph

Review in Clinical & translational immunology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Hao NguyenQueensland Institute of Medical Research, Berghofer Brisbane QLD Australia.ORCID https://orcid.org/0009-0001-0948-6989
Merrin Mary EapenTranslational Genomics Program Garvan Institute of Medical Research Darlinghurst NSW Australia.
Quan NguyenQueensland Institute of Medical Research, Berghofer Brisbane QLD Australia.
Ankur SharmaTranslational Genomics Program Garvan Institute of Medical Research Darlinghurst NSW Australia.ORCID https://orcid.org/0000-0002-6862-136X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Spatial transcriptomics (ST) and spatial proteomics (SP) have revolutionised our ability to map RNA and protein distributions within intact tissues, shedding new light on the dynamic interactions that drive physiological processes in healthy and diseased tissues. We discuss how the latest ST and SP technologies, large public data resources and advanced computational pipelines can be applied to study the tumor microenvironment (TME), focussing on the interactions within the TME. We also highlight how these developments have enabled the in-depth spatial characterisation of tumors and their TME across the continuum of cancer progression, from initiation to metastasis. Despite these advances, major gaps persist in cross-platform integration, data standardisation and computational scalability for high-plex single-cell datasets. The integration of artificial intelligence (AI) holds great promise for biological and translational applications but requires standardised workflows, cost-effective pipelines, rigorous pre-clinical and clinical validation, and improved interpretability of AI models. Additional cross-disciplinary development of explainable, scalable tools for TME analysis of cellular interactions and disease progression will be essential to integrate spatial omics into daily precision cancer medicine.

Indexed as

artifical intelligencecellular interactionsprecision cancer medicinespatial proteomicsspatial transcriptomicstumor microenvironment

Identifiers

PMID41983103
PMCPMC13075546

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.