Evidence map›Paper›PMID 41981202›Full record

ArticleScientific reports2026

Integrated approaches for pathogen monitoring and shotgun metagenomic analysis in Atlantic salmon farming.

Ottavia Benedicenti, David A Strand, Saima Nasrin Mohammad, Snorre Gulla, Marit Måsøy Amundsen, Hilde Sindre, Trude Vrålstad

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific reports, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ottavia BenedicentiNorwegian Veterinary Institute, Postboks 64, 1431, Ås, Norway. ottavia.benedicenti@vetinst.no.
David A StrandNorwegian Veterinary Institute, Postboks 64, 1431, Ås, Norway.
Saima Nasrin MohammadNorwegian Veterinary Institute, Postboks 64, 1431, Ås, Norway.
Snorre GullaNorwegian Veterinary Institute, Postboks 64, 1431, Ås, Norway.
Marit Måsøy AmundsenNorwegian Veterinary Institute, Postboks 64, 1431, Ås, Norway.
Hilde SindreNorwegian Veterinary Institute, Postboks 64, 1431, Ås, Norway.
Trude VrålstadNorwegian Veterinary Institute, Postboks 64, 1431, Ås, Norway.

Funding

European Commission 101136346Fiskeri - og havbruksnæringens forskningsfond 901674Norges Forskningsråd 328724
6 · The paper itself

Abstract

Specific tools for detecting waterborne pathogens are essential for limiting disease spread in aquaculture. We evaluated a field-deployable workflow combining filtration of eDNA/eRNA with targeted (RT-)qPCR and complementary shotgun metagenomics to monitor pathogens and microbial community dynamics in a single-farm study following one Atlantic salmon production cohort from hatchery to slaughter. The primary aim was to assess workflow feasibility and performance under real farm conditions, while secondarily examining whether metagenomic profiles could contextualise microbial shifts associated with pathogen presence. ISAV was consistently detected in hatchery water at ~ 4 × 10

Indexed as

AquacultureFish DiseasesMetagenomicsSalmo salarAnimalsMetagenomeSeawaterShotgun SequencingWorkflowAtlantic salmon pathogensEnvironmental DNANon-invasive samplingShotgun metagenomic sequencing

Identifiers

PMID41981202
PMCPMC13237240

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.