Evidence map›Paper›PMID 41976454›Full record

ArticleFoods (Basel, Switzerland)2026

Raw Milk Cheese Microbiomes: A Paradigm for Interactions of Lactic Acid Bacteria in Food Ecosystems.

Christine K Olupot, Olivia Sheehan, Zoe Kampff, Brian McDonnell, David F Woods, Gabriele Andrea Lugli, Marco Ventura, F Jerry Reen, Douwe van Sinderen, Jennifer Mahony

Abstract read
In one paragraph

Article in Foods (Basel, Switzerland), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Christine K OlupotSchool of Microbiology, University College Cork, T12 YT20 Cork, Ireland.ORCID 0009-0005-4323-133X
Olivia SheehanSchool of Microbiology, University College Cork, T12 YT20 Cork, Ireland.
Zoe KampffSchool of Microbiology, University College Cork, T12 YT20 Cork, Ireland.ORCID 0000-0002-8399-1465
Brian McDonnellSchool of Microbiology, University College Cork, T12 YT20 Cork, Ireland.ORCID 0000-0003-1704-8759
David F WoodsSchool of Microbiology, University College Cork, T12 YT20 Cork, Ireland.ORCID 0000-0002-5623-6501
Gabriele Andrea LugliLaboratory of Probiogenomics, Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, 43124 Parma, Italy.ORCID 0000-0002-3024-0537
Marco VenturaLaboratory of Probiogenomics, Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, 43124 Parma, Italy.
F Jerry ReenSchool of Microbiology, University College Cork, T12 YT20 Cork, Ireland.
Douwe van SinderenSchool of Microbiology, University College Cork, T12 YT20 Cork, Ireland.ORCID 0000-0003-1823-7957
Jennifer MahonySchool of Microbiology, University College Cork, T12 YT20 Cork, Ireland.ORCID 0000-0001-5846-6303

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

While industrial-scale dairy fermentations often employ pasteurized milk as the substrate, many farmhouse and traditional production practices apply raw milk derived from a variety of mammals. Certain artisanal production systems rely on the autochthonous microbiota of the milk, fermentation vessels, equipment and/or environment to initiate milk coagulation. While the technological properties of lactic acid bacteria associated with dairy fermentations are well described, their interactions with other organisms during fermentation and cheese ripening are poorly investigated. This study presents an overview of the microbial ecology of raw and pasteurized milk used in the production of Irish farmhouse cheeses using metagenomic and culture-based approaches. Metagenomic analysis of four raw milk-derived cheeses established the dominant presence of either lactococci or

Indexed as

culture-dependent analysisfood fermentationsHafnia spp.Lactococcusmetagenomicsnon-starter lactic acid bacteriastarter lactic acid bacteriaStreptococcus

Identifiers

PMID41976454
PMCPMC13073097

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.