Evidence map›Paper›PMID 41975250›Full record

ArticlePlant, cell & environment2026

KNOX II Transcription Factor HOS59 Regulates Gypsy Transposable Elements to Modulate Panicle Development in Rice.

Xinyi Zhang, Minghao Sheng, Yaxin Cao, Xinyue Yu, Yawei Liang, Wenying Xu, Liwei Zhang, Zhen Su

Abstract read
In one paragraph

Article in Plant, cell & environment, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Xinyi ZhangState Key Laboratory of Plant Environmental Resilience, College of Biological Sciences, China Agricultural University, Beijing, China.
Minghao ShengState Key Laboratory of Plant Environmental Resilience, College of Biological Sciences, China Agricultural University, Beijing, China.
Yaxin CaoState Key Laboratory of Plant Environmental Resilience, College of Biological Sciences, China Agricultural University, Beijing, China.
Xinyue YuState Key Laboratory of Plant Environmental Resilience, College of Biological Sciences, China Agricultural University, Beijing, China.
Yawei LiangState Key Laboratory of Plant Environmental Resilience, College of Biological Sciences, China Agricultural University, Beijing, China.
Wenying XuState Key Laboratory of Plant Environmental Resilience, College of Biological Sciences, China Agricultural University, Beijing, China.
Liwei ZhangDepartment of Nutrition and Health, China Agricultural University, Beijing, China.
Zhen SuState Key Laboratory of Plant Environmental Resilience, College of Biological Sciences, China Agricultural University, Beijing, China.ORCID https://orcid.org/0000-0001-6579-3847

Funding

National Natural Science Foundation of China 32170673
6 · The paper itself

Abstract

The KNOX transcription factor family plays important roles in plant growth and development. However, the precise functions and regulatory mechanisms of KNOX II genes in reproductive tissues remain to be elucidated. Thus, this study integrated complementary techniques, including ChIP-seq, IP-MS, and transcriptome sequencing, to investigate the chromatin distribution and functional features of HOS59, a member of the KNOX II subclass. Notably, a higher enrichment of HOS59 deposition in Gypsy TEs was observed in rice panicles. Regions where HOS59 colocalised in Gypsy TEs were highly enriched with H3K9me2 modification and were preferentially distributed in pericentromeric regions. PPI analysis suggested that HOS59 may affect heterochromatin stability through the RdDM pathway and H3K9me2 modification. Meanwhile, overexpression of HOS59 promoted the maintenance of heterochromatin stability. Altered expression patterns of cell cycle-related genes in hos59 mutants indicated a key regulatory role for HOS59 in silencing Gypsy TEs in pericentromeric regions, as well as in cell division and panicle development. Moreover, the HOS59-OsSPL13-SRS5 module regulating grain size was identified. In summary, our findings revealed that HOS59 may bind to and repress Gypsy TEs to affect grain development, which provides novel insights into the regulatory networks of KNOX family genes in rice.

Indexed as

DNA Transposable ElementsOryzaPlant ProteinsTranscription FactorsGene Expression Regulation, PlantHeterochromatinMutationDNA Transposable ElementsHeterochromatinPlant ProteinsTranscription Factorsheterochromatin stabilityHOS59KNOX II transcription factorOryza sativapanicle developmentTE silencing

Identifiers

PMID41975250
PMCPMC13353714

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.