Evidence map›Paper›PMID 41972236›Full record

ArticleProceedings. IEEE International Symposium on Biomedical Imaging2020

Short Trajectory Segmentation With 1D Unet Framework: Application To Secretory Vesicle Dynamics.

Mariia Dmitrieva, Joël Lefebvre, Kristofer Delas Peñas, Helen L Zenner, Jennifer Richens, Daniel St Johnston, Jens Rittscher

Abstract read
In one paragraph

Article in Proceedings. IEEE International Symposium on Biomedical Imaging, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Mariia DmitrievaDepartment of Engineering Science, University of Oxford, Oxford, UK.
Joël LefebvreDepartment of Engineering Science, University of Oxford, Oxford, UK.
Kristofer Delas PeñasDepartment of Engineering Science, University of Oxford, Oxford, UK.
Helen L ZennerGurdon Institute, University of Cambridge, Cambridge, UK.
Jennifer RichensGurdon Institute, University of Cambridge, Cambridge, UK.
Daniel St JohnstonGurdon Institute, University of Cambridge, Cambridge, UK.
Jens RittscherDepartment of Engineering Science, University of Oxford, Oxford, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The study of protein transport in living cell requires automated techniques to capture and quantify dynamics of the protein packaged into secretory vesicles. The movement of the vesicles is not consistent along the trajectory, therefore the quantitative study of their dynamics requires trajectories segmentation. This paper explores quantification of such vesicle dynamics and introduces a novel 1D U-Net based trajectory segmentation. Unlike existing mean squared displacement based methods, our proposed framework is not restricted under the requirement of long trajectories for effective segmentation. Moreover, as our approach provides segmentation within each sliding window, it enables effectively capture even short segments. The approach is quantified by the data acquired from spinning disk microscopy imaging of protein trafficking in

Indexed as

deep learningprotein traffickingsliding windowtrajectory segmentationU-Net

Identifiers

PMID41972236
PMCPMC7618930

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.