Evidence map›Paper›PMID 41970641›Full record

ReviewFrontiers in genetics2026

Advances in algorithms for normalizer gene selection in qRT-PCR: implications for cancer biology and precision medicine.

Abhay Kumar Pathak, Sukhad Kural, Lalit Kumar, Sumit Saini, Manjari Gupta

Abstract readReview
In one paragraph

Review in Frontiers in genetics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Abhay Kumar Pathak *Department of Computer Science, Institute of Science, Banaras Hindu University, Varanasi, India.
Sukhad Kural *Department of Urology, Institute of Medical Sciences, Banaras Hindu University, Varanasi, India.
Lalit KumarDepartment of Urology, Institute of Medical Sciences, Banaras Hindu University, Varanasi, India.
Sumit SainiAllegheny Health Network, Pittsburgh, PA, United States.
Manjari GuptaDepartment of Computer Science, Institute of Science, Banaras Hindu University, Varanasi, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Quantitative Reverse Transcription Polymerase Chain Reaction (qRT-PCR) plays a significant role in gene expression analysis in cancer research and precision medicine. It allows precise quantification of gene expression variation which is necessary for understanding tumor biology, identifying predictive biomarkers and developing therapeutics interventions. However the accuracy and stability of qRT-PCR data heavily rely on finding stable reference genes. The gene stability refers to minimal variation in expression levels of a candidate reference gene across different biological conditions, sample groups and technical replicates. Traditionally, housekeeping genes such as β-actin, GAPDH and 18S rRNA have been used for normalization but consistency and variation can vary under different experimental settings. Over time, mathematical and statistical tools such as geNorm, NormFinder, BestKeeper and gQuant have been developed to find most stable reference genes. These algorithms have become essential in ensuring accurate and reproducible data in cancer research, where gene expression profiles can vary significantly across different tumor types, stages and individual patients. This review focuses on the progression and advancements of traditional and advanced reference gene selection methods, applications in cancer research and their significant role in precision medicine. It presents an overview of the commonly employed normalizers, outlining their respective advantages and limitations, and includes a concise discussion on the assessment of gene stability across diverse experimental contexts. Additionally, it emphasizes their use in cancer research and their importance in enhancing the accuracy and consistency of gene expression normalization, particularly within precision medicine.

Indexed as

biomarkershousekeeping genesnormalizationprecision medicineqRT-PCR

Identifiers

PMID41970641
PMCPMC13065376

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.