Evidence map›Paper›PMID 41968091›Full record

ArticleG3 (Bethesda, Md.)2026

Genomic insights into antagonistic coevolution: collagen-like protein expansion and genome plasticity in the Daphnia parasite Pasteuria ramosa.

Alix Thivolle, Marjut Paljakka, Dieter Ebert, Peter D Fields

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Alix ThivolleDepartment of Environmental Sciences, Zoology, University of Basel, Basel 4051, Basel-Stadt, Switzerland.ORCID 0000-0002-6834-1325
Marjut PaljakkaAdvance Executive Education, University of Jyväskylä, Jyväskylä 40014, Central Finland, Finland.
Dieter EbertDepartment of Environmental Sciences, Zoology, University of Basel, Basel 4051, Basel-Stadt, Switzerland.ORCID 0000-0003-2653-3772
Peter D FieldsDepartment of Environmental Sciences, Zoology, University of Basel, Basel 4051, Basel-Stadt, Switzerland.ORCID 0000-0003-2959-2524

Funding

Swiss National Science Foundation 310030_188887Swiss National Science Foundation 310030_219529
6 · The paper itself

Abstract

Collagen-like proteins (CLPs) serve many pathogenic bacteria as adhesins to attach to host tissue. It was suggested that CLPs are a major determinant in the coevolution of the model system Daphnia (Crustacean) and its virulent pathogen Pasteuria ramosa (Bacillota). We analyzed 5 new high-quality genomes of P. ramosa originating from three host species. CLP genes underwent a radiation in P. ramosa. Genome comparison showed a high synteny, with few structural variations, mainly involving CLPs and transposases, both of which underwent recent multiplications. While most CLP genes are conserved, the presence/absence of some CLP genes varies among isolates. Our findings suggest a rapid radiation of CLP genes. These observations, derived from the first published genomes of P. ramosa, are consistent with the notion of rapid Pasteuria-Daphnia coevolution, as previously suggested for this highly specific host-parasite system.

Indexed as

CollagenDaphniaEvolution, MolecularGenome, BacterialGenomicsPasteuriaAnimalsGenomeHost-Pathogen InteractionsPhylogenySyntenyCollagencollagen-like proteinDaphnia magnagenome assemblygenome rearrangementhost-pathogen interactionPasteuria ramosa

Identifiers

PMID41968091
PMCPMC13233619

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.