Evidence map›Paper›PMID 41964931›Full record

ArticleGigaScience2026

Community-curated Galaxy interfaces with the Galaxy Labs Engine.

Cameron J Hyde, Anna Syme, Bérénice Batut, Paul F Zierep, Winnie Mok, Wendi A Bacon, Gareth R Price

Abstract read
In one paragraph

Article in GigaScience, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Cameron J HydeQCIF Data and Software Solutions, Level 1, 315 Brunswick Street, Fortitude Valley, Brisbane, 4006, Queensland, Australia.ORCID 0000-0002-5913-9766
Anna SymeUniversity of Melbourne, Grattan Street, Parkville, Victoria, 3010, Australia.ORCID 0000-0002-9906-0673
Bérénice BatutIFB-core, Institut Français de Bioinformatique (IFB), CNRS, INSERM, INRAE, CEA, 94800 Villejuif, France.ORCID 0000-0001-9852-1987
Paul F ZierepDepartment of Computer Science, University of Freiburg, Georges-Koehler-Allee 079, D-79110 Freiburg, Germany.ORCID 0000-0003-2982-388X
Winnie MokAustralian BioCommons, Faculty of Medicine, University of Melbourne, Grattan Street, Parkville, Victoria, 3010, Australia.ORCID 0009-0006-1804-9621
Wendi A BaconSchool of Life, Health & Chemical Sciences, The Open University, Walton Hall, Milton Keynes, MK7 6AA, United Kingdom.ORCID 0000-0002-8170-8806
Gareth R PriceAustralian BioCommons, Faculty of Medicine, University of Melbourne, Grattan Street, Parkville, Victoria, 3010, Australia.ORCID 0000-0003-2439-8650

Funding

Queensland GovernmentUniversity of Melbourne
6 · The paper itself

Abstract

The Galaxy platform is a globally distributed environment for data-intensive research, providing thousands of analysis tools across major public servers. However, this decentralized ecosystem presents usability challenges for both users and administrators, particularly in surfacing relevant tools and workflows for specific communities. To improve discoverability and support global collaboration, the Galaxy project has employed community-driven "Galaxy Flavours"-subdomains with curated content for defined research domains. While conceptually valuable, Flavours suffer from critical limitations: They are statically deployed, difficult to replicate across servers, and often provide inconsistent and unintuitive user interfaces. To address these challenges, we developed the Galaxy Labs Engine (GLE), a service that enables the creation of Galaxy Labs. This new paradigm enables globally synchronized, domain-specific entry points built from structured, reusable web content. GLE separates content from deployment, allowing communities to define a shared canonical representation of their domain, while enabling individual Galaxy servers to locally customize presentation. Labs are designed to guide users through curated tools, workflows, and training resources, and are aimed at researchers who are new to the analytical methods or technologies specific to the domain. The GLE provides a consistent, customizable, and community-driven interface layer for the Galaxy ecosystem. By fostering FAIR principles, labs offer a scalable improvement to Flavours and enhance Galaxy's ability to support diverse research communities. GLE is open-source and currently deployed at https://labs.usegalaxy.org.au, with multiple Labs already supporting active user groups. This work strengthens Galaxy's role as a collaborative platform for reproducible, user-centred science.

Indexed as

Computational BiologySoftwareUser-Computer InterfaceInternetWorkflowanalysiscommunitydataFAIRGalaxyresourcesworkflows

Identifiers

PMID41964931
PMCPMC13148399

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.