ArticleScientific data2026
A chromosome-level genome assembly of the panda loach (Yaoshania pachychilus).
Article in Scientific data, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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Abstract
Yaoshania pachychilus (Gastromyzontidae, Cypriniformes) is a benthic species inhabiting torrential mountain streams, where it attaches to rocks using adhesive pelvic and pectoral fins. Its juvenile black-white coloration has made it popular in the ornamental fish trade, yet wild populations face increasing threats. Here, we present the first chromosome-level genome assembly for this species, generated using PacBio HiFi and Hi-C technologies. The final assembly spans 451.24 Mb, with a contig N50 of 9.87 Mb, and 99.2% of the sequences are anchored onto 25 pseudo-chromosomes. We annotated repetitive elements accounting for 27.8% of the genome and predicted 21,816 protein-coding genes. BUSCO completeness exceeded 97% for both the genome assembly and gene annotation. This reference genome provides a valuable resource for investigating torrent adaptation and pigmentation in Y. pachychilus, and also supports broader phylogenomic and adaptive evolution studies across Gastromyzontidae.
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