Evidence map›Paper›PMID 41962864›Full record

ArticleThe Journal of biological chemistry2026

KDM5A methylation modulates its genomic demethylase and transcriptional actions.

Tram Anh Tran, Gokul Gopinathan, Clarissa G Nuñez, Frank Goodavish, Shwu-Yuan Wu, Randy Tran, Andrew Lemoff, Luc Girard, Elisabeth D Martinez

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Tram Anh TranHamon Center for Therapeutic Oncology Research, UT Southwestern, Medical Center, Dallas, Texas, USA.
Gokul GopinathanHamon Center for Therapeutic Oncology Research, UT Southwestern, Medical Center, Dallas, Texas, USA.
Clarissa G NuñezHamon Center for Therapeutic Oncology Research, UT Southwestern, Medical Center, Dallas, Texas, USA.
Frank GoodavishHamon Center for Therapeutic Oncology Research, UT Southwestern, Medical Center, Dallas, Texas, USA.
Shwu-Yuan WuSimmons Comprehensive Cancer Center, Medical Center, Dallas, Texas, USA; Department of Biochemistry, UT Southwestern, Medical Center, Dallas, Texas, USA.
Randy TranHamon Center for Therapeutic Oncology Research, UT Southwestern, Medical Center, Dallas, Texas, USA.
Andrew LemoffDepartment of Biochemistry, UT Southwestern, Medical Center, Dallas, Texas, USA.
Luc GirardHamon Center for Therapeutic Oncology Research, UT Southwestern, Medical Center, Dallas, Texas, USA; Department of Pharmacology, UT Southwestern, Medical Center, Dallas, Texas, USA.
Elisabeth D MartinezHamon Center for Therapeutic Oncology Research, UT Southwestern, Medical Center, Dallas, Texas, USA; Simmons Comprehensive Cancer Center, Medical Center, Dallas, Texas, USA; Department of Pharmacology, UT Southwestern, Medical Center, Dallas, Texas, USA. Electronic address: elisabeth.martinez@utsouthwestern.edu.

Funding

UNIVERSITY OF TEXAS--SPORE IN LUNG CANCERP50CA070907 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI HEYMACH, JOHN V. · 1996 to 2024
$57.4M
Post-translational modifications control JARID enzyme activity during DNA damageR03CA273480 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI MARTINEZ, ELISABETH D · 2023 to 2024
$310k
NCI NIH HHS P50 CA070907NCI NIH HHS R03 CA273480
6 · The paper itself

Abstract

Members of the KDM5 family of Jumonji histone demethylases have been implicated in a variety of human diseases, including multiple cancers and neurological disorders. The regulation of KDM5 enzyme levels and activity, however, are poorly understood. Here we report that KDM5A is methylated by SMYD2 and that this methylation decreases histone demethylase activity and partly alters the KDM5A protein interactome. A mutant KDM5A that can no longer be modified at K1063 exhibits unique genomic sites of action, demethylates H3K4me3 more robustly across the genome and at new loci, has stronger and unique transcriptional effects, and distinct protein-protein interactions. As a result, a number of cell proliferation pathways are affected, and cancer cell growth is blunted. This study illustrates the functional consequences of post-translational modifications of lysine residues in KDM enzymes impacting genomic histone demethylation, gene expression, protein-protein interactions and growth signaling, and establishes lysine methylation as a regulatory event in KDM5A action.

Indexed as

Retinoblastoma-Binding Protein 2Transcription, GeneticCell ProliferationHistone-Lysine N-MethyltransferaseHistonesHumansMethylationHistone-Lysine N-MethyltransferaseHistonesKDM5A protein, humanRetinoblastoma-Binding Protein 2SMYD2 protein, humangene regulationH3K4me3 demethylationKDM5AmethylationSMYD2

Identifiers

PMID41962864
PMCPMC13194650

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.