Evidence map›Paper›PMID 41959516›Full record

ArticlebioRxiv : the preprint server for biology2026

DM: a simple solution to suppress air-water interface interactions in cryo-EM.

Maria Rafiq, Jan-Hannes Schäfer, Hamidreza Rahmani, Shaochen You, Michael Bollong, Danielle Grotjahn, R Luke Wiseman, Gabriel C Lander

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Maria RafiqDepartment of Integrative Computational and Structural Biology, Scripps Research Institute, La Jolla, CA, 92307.ORCID 0000-0001-9118-0788
Jan-Hannes SchäferDepartment of Integrative Computational and Structural Biology, Scripps Research Institute, La Jolla, CA, 92307.ORCID 0000-0001-8163-1629
Hamidreza RahmaniDepartment of Integrative Computational and Structural Biology, Scripps Research Institute, La Jolla, CA, 92307.ORCID 0000-0003-0222-6989
Shaochen YouDepartment of Chemistry, Scripps Research Institute, La Jolla, CA, 92307.ORCID 0009-0009-8849-7114
Michael BollongDepartment of Chemistry, Scripps Research Institute, La Jolla, CA, 92307.ORCID 0000-0001-9439-1476
Danielle GrotjahnDepartment of Integrative Computational and Structural Biology, Scripps Research Institute, La Jolla, CA, 92307.ORCID 0000-0001-5908-7882
R Luke WisemanDepartment of Molecular and Cellular Biology, Scripps Research Institute, La Jolla, CA, 92037.ORCID 0000-0001-9287-6840
Gabriel C LanderDepartment of Integrative Computational and Structural Biology, Scripps Research Institute, La Jolla, CA, 92307.ORCID 0000-0003-4921-1135

Funding

Automated, optimized, intelligent data collection for cryo-EMR01GM143805 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI LANDER, GABRIEL C · 2021 to 2025
$4.7M
Developing graphene grids to overcome air-water-interface issuesR21GM154216 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI GROTJAHN, DANIELLE ANN · 2024 to 2025
$506k
NIGMS NIH HHS R01 GM143805NIGMS NIH HHS R21 GM154216
6 · The paper itself

Abstract

The air-water interface (AWI) remains the primary barrier to routine high-resolution cryo-EM structure determination, driving protein adsorption, structural denaturation, and restricted particle orientations during vitrification. Here, we describe a simple and broadly applicable strategy to mitigate these effects using the mild non-ionic detergent n-decyl-β-D-maltopyranoside (DM). Addition of DM at low millimolar concentrations immediately prior to vitrification consistently suppresses AWI-driven artifacts, resulting in improved angular sampling, reduced structural damage, and enhanced reconstruction quality across diverse macromolecular systems. Using this approach, we obtained a high-resolution reconstruction of the 65 kDa Nucleophosmin 1 pentamer, a target previously limited by severe preferred orientation issues. We further show that DM promotes isotropic particle distributions for high-resolution reconstruction of hemagglutinin, transthyretin, as well as suppressing denaturation of aldolase while stabilizing its C-terminus. Our results indicate that DM effectively passivates deleterious air-water interface interactions without compromising particle integrity. These results establish DM as an effective additive for improving the robustness of single-particle cryo-EM sample preparation.

Indexed as

cryo-EMpreferred orientationsingle-particle analysis

Identifiers

PMID41959516
PMCPMC13060375

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.