Evidence map›Paper›PMID 41959472›Full record

ArticlebioRxiv : the preprint server for biology2026

Track Hub Quickload Translator: Convert Track Hub or Quickload data for viewing in the UCSC Genome Browser or the Integrated Genome Browser.

Nowlan Freese, Karthik Raveendran, Jaya Sravani Sirigineedi, Udaya Chinta, Philip Badzuh, Omkar Marne, Chirag Shetty, Irvin Naylor, Saideepthi Jagarapu, Ann E Loraine

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Nowlan FreeseDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, Kannapolis, NC 28081, USA.ORCID 0000-0002-5616-9230
Karthik RaveendranDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, Kannapolis, NC 28081, USA.
Jaya Sravani SirigineediDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, Kannapolis, NC 28081, USA.
Udaya ChintaDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, Kannapolis, NC 28081, USA.
Philip BadzuhDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, Kannapolis, NC 28081, USA.
Omkar MarneDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, Kannapolis, NC 28081, USA.ORCID 0000-0002-4548-194X
Chirag ShettyDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, Kannapolis, NC 28081, USA.
Irvin NaylorDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, Kannapolis, NC 28081, USA.
Saideepthi JagarapuDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, Kannapolis, NC 28081, USA.
Ann E LoraineDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, Kannapolis, NC 28081, USA.ORCID 0000-0002-8365-0177

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Summary: Track Hub Quickload Translator is a web application that interconverts University of California Santa Cruz (UCSC) Genome Browser track hub and Integrated Genome Browser (IGB) data repository formats by translating the track hub or Quickload configuration files to the other genome browsers required format. This new work enables researchers to work with tens of thousands of published genome assemblies for the first time using either browser. Availability and Implementation: Track Hub Quickload Translator is implemented using Python 3 and freely available to use at translate.bioviz.org. Integrated Genome Browser is available from BioViz.org. Track Hub Quickload Translator, GenArk Genomes, and the Integrated Genome Browser source code is available from github.org/lorainelab.

Identifiers

PMID41959472
PMCPMC13060283

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.