Evidence map›Paper›PMID 41958478›Full record

ArticleVirus evolution2026

Genetic and antigenic diversity of rotavirus A in faeces from Danish pigs.

Kasper Pedersen, Nicole B Goecke, Marta Canuti, Pia Ryt-Hansen, Nicolai R Weber, Martí Cortey, Lars Erik Larsen

Abstract read
In one paragraph

Article in Virus evolution, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kasper PedersenFaculty of Health and Medical Sciences, Department of Veterinary and Animal Sciences, University of Copenhagen, Dyrlægevej 88, 1870 Frederiksberg C, Denmark.ORCID https://orcid.org/0009-0002-0405-0489
Nicole B GoeckeFaculty of Health and Medical Sciences, Department of Veterinary and Animal Sciences, University of Copenhagen, Dyrlægevej 88, 1870 Frederiksberg C, Denmark.
Marta CanutiFaculty of Health and Medical Sciences, Department of Veterinary and Animal Sciences, University of Copenhagen, Dyrlægevej 88, 1870 Frederiksberg C, Denmark.
Pia Ryt-HansenFaculty of Health and Medical Sciences, Department of Veterinary and Animal Sciences, University of Copenhagen, Dyrlægevej 88, 1870 Frederiksberg C, Denmark.
Nicolai R WeberDanish Agriculture & Food Council, Vesterbrogade 4A, 4. floor, 1620 Copenhagen V,  Denmark.
Martí CorteyDepartament de Sanitat i Anatomia Animals, Facultat de Veterinària, Universitat Autònoma de Barcelona, 08193 Bellaterra, Cerdanyola del Vallès, Spain.ORCID https://orcid.org/0000-0003-1126-3423
Lars Erik LarsenFaculty of Health and Medical Sciences, Department of Veterinary and Animal Sciences, University of Copenhagen, Dyrlægevej 88, 1870 Frederiksberg C, Denmark.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rotavirus A (RVA) causes viral gastroenteritis and is frequently detected in young piglets. These viruses are genotyped according to diversity within the outer capsid coding gene segments designated viral protein 4 (VP4) and 7 (VP7). The present study defines a comprehensive baseline for porcine RVA VP4 and VP7 genotypic diversity in Danish swine herds, important for future monitoring efforts. Disparities between amino acid residues in antigenic domains of the Danish RVA field viruses and the vaccine strain named 'Ohio State University (OSU) G5P[7]' were also investigated. RVA nucleic acids from positive faecal samples of 63/84 tested Danish swine herds were amplified using conventional reverse transcriptase polymerase chain reaction with primers specific for VP7 and VP4 genes and sequenced using Sanger or Illumina technologies. In total, 127 VP7 genes and 110 VP4 genes were sequenced and genotyped. Eight different VP7 genotypes (G2, G3, G4, G5, G9, G10, G11 and G26) and six different VP4 genotypes (P[6], P[7], P[13], P[23], P[26], and P[32]) together with two possibly new VP4 genotypes (P[X1] and P[X2]) were detected, and the most frequent genotype constellations were G9P[23], G9P[13], G5P[13], and G5P[23]. Nine rectal swabs from pigs of nine different herds revealed infections with multiple VP7 genotypes, and four swabs from pigs of four herds presented with various VP4 genotypes. Sampling of several pigs within the same herd revealed co-circulation of different genotypes, which emphasizes that several pigs should be sampled for representative RVA genotyping. Notable differences between the RVA field viruses and the vaccine strain were evident, as on average 11.7/29 and 25.8/37 amino acid residues in immunogenic domains differed in VP7 and VP4 genotypes, respectively. Considering the high RVA field strain diversity and their high divergence from the vaccine strains, future studies are needed to investigate the efficacy of available porcine RVA vaccines.

Indexed as

antigenic epitopesgenotypingnext generation sequencingphylogenyrotavirus A

Identifiers

PMID41958478
PMCPMC13061130

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.