Evidence map›Paper›PMID 41951630›Full record

ArticleNature communications2026

Establishment of DNA methylation during primate germ cell development.

Kazuaki Kojima, Yi Li, Shin-Ichi Tomizawa, Miho Kohara, Yuta Kuze, Takuya Sato, Toshinobu Ebata, Musashi Kubiura-Ichimaru, Mei Cao, Tatsuya Hattori and 16 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Kazuaki KojimaCenter for Regenerative Medicine, National Center for Child Health and Development (NCCHD), Tokyo, Japan.
Yi LiDepartment of Urology, Center for Reproductive Sciences, University of California, San Francisco, San Francisco, USA.ORCID http://orcid.org/0000-0002-2101-0051
Shin-Ichi TomizawaDepartment of Histology and Cell Biology, Yokohama City University School of Medicine, Yokohama, Japan.ORCID http://orcid.org/0000-0002-8291-6623
Miho KoharaTsukuba Primate Research Center, National Institutes of Biomedical Innovation, Health and Nutrition, Tsukuba, Japan.
Yuta KuzeDynacom Inc, Chiba, Japan.
Takuya SatoDynacom Inc, Chiba, Japan.
Toshinobu EbataDynacom Inc, Chiba, Japan.
Musashi Kubiura-IchimaruDivision of Molecular Genetics and Epigenetics, Department of Biomolecular Sciences, Faculty of Medicine, Saga University, Saga, Japan.
Mei CaoDepartment of Urology, University of California, San Francisco, San Francisco, USA.
Tatsuya HattoriDivision of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, Noda, Japan.ORCID http://orcid.org/0009-0007-9675-5705
So MaezawaDivision of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, Noda, Japan.ORCID http://orcid.org/0000-0002-9060-2042
Sofia B WingeDepartment of Growth and Reproduction, Copenhagen University Hospital-Rigshospitalet, Copenhagen, Denmark.ORCID http://orcid.org/0000-0003-1666-1228
Kristian AlmstrupDepartment of Growth and Reproduction, Copenhagen University Hospital-Rigshospitalet, Copenhagen, Denmark.ORCID http://orcid.org/0000-0002-1832-0307
Ryo NakakiRhelixa Inc, Tokyo, Japan.
Shinya SatoMolecular Pathology and Genetics Division, Kanagawa Cancer Center Research Institute, Yokohama, Japan.
Yohei MiyagiMolecular Pathology and Genetics Division, Kanagawa Cancer Center Research Institute, Yokohama, Japan.ORCID http://orcid.org/0000-0002-0056-7010
Yataro DaigoResearch Platform Office, Institute of Medical Science, The University of Tokyo, Tokyo, Japan.
Takako YoshiokaDepartment of Pathology, NCCHD, Tokyo, Japan.
Yuichi HasegawaDivision of Pediatric Urology, Department of Surgical Specialties, NCCHD, Tokyo, Japan.
Yoshiaki KinoshitaDepartment of Pediatric Surgery, Niigata University Graduate School of Medical and Dental Sciences, Niigata, Japan.
Taiju HyugaDepartment of Pediatric Urology, Jichi Medical University, Children's Medical Center Tochigi, Shimotsuke, Japan.
Kimihiko MoriyaDepartment of Pediatric Urology, Jichi Medical University, Children's Medical Center Tochigi, Shimotsuke, Japan.
Hideyuki KobayashiDepartment of Urology, Toho University Faculty of Medicine, Tokyo, Japan.
Laurence BaskinDepartment of Urology, University of California, San Francisco, San Francisco, USA.
Tadashi SankaiTsukuba Primate Research Center, National Institutes of Biomedical Innovation, Health and Nutrition, Tsukuba, Japan.ORCID http://orcid.org/0000-0002-6100-1176
Toshiaki WatanabeCenter for Regenerative Medicine, National Center for Child Health and Development (NCCHD), Tokyo, Japan. watanabe-tos@ncchd.go.jp.ORCID http://orcid.org/0000-0002-8250-8654

Funding

Japan Agency for Medical Research and Development (AMED) JP19gm6310010, JP20gm6310010, JP21gm6310010, and JP22gm6310010MEXT | Japan Society for the Promotion of Science (JSPS) 20H05764, 20H03177, 22K18356, 22H04923 (CoBiA) and 24KK0143MEXT | JST | Precursory Research for Embryonic Science and Technology (PRESTO) JPMJPR228B
6 · The paper itself

Abstract

DNA methylation is almost completely erased throughout the genome in primordial germ cells, and then reestablished during mammalian germ cell development. In this study, we demonstrate that in three primate species-marmosets, macaques, and humans-de novo methylation occurs postnatally in prospermatogonia in males and growing oocytes in females. In monkey prospermatogonia, de novo methylation is a prolonged process spanning 6 months to 1 year, primarily occurring within the first year after birth. In human testes, this process may occur more slowly over an extended period. Single-cell bisulfite sequencing analyses in spermatogonia of three species revealed that all genomic regions acquire DNA methylation gradually. However, DNA methylation levels increase faster in genic regions compared to intergenic regions. Unlike in mice, mitotic divisions occur during the establishment of methylation in prospermatogonia. The established methylation is likely maintained because maintenance methyltransferase DNMT1 is specifically expressed during the mitotic stage. Our findings show notable differences in the de novo DNA methylation processes in male germ cells between mice and primates.

Indexed as

DNA MethylationGerm CellsSpermatogoniaAnimalsDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesFemaleHumansMacacaMaleMiceOocytesSpermatogenesisTestisDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-Methyltransferases

Identifiers

PMID41951630
PMCPMC13237064

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.