Evidence map›Paper›PMID 41949012›Full record

ArticleMicrobial genomics2026

Genomic epidemiology of

Alexander B Beams, Yexuan Song, Jennifer McNichol, Bradley R Jones, Benjamin Sobkowiak, Peter MacPherson, Marriott Nliwasa, Victor Ndhlovu, Mphatso D Phiri, Ted Cohen and 1 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microbial genomics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Genomic epidemiology ofMicrobial genomics · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Alexander B BeamsDepartment of Mathematics, Simon Fraser University, Burnaby, Canada.
Yexuan SongDepartment of Mathematics, Simon Fraser University, Burnaby, Canada.
Jennifer McNicholDepartment of Mathematics, Simon Fraser University, Burnaby, Canada.
Bradley R JonesDepartment of Mathematics, Simon Fraser University, Burnaby, Canada.
Benjamin SobkowiakInfection, Immunity and Inflammation Dept, University College London, London, UK.
Peter MacPhersonSchool of Health & Wellbeing, University of Glasgow, Glasgow, UK.
Marriott NliwasaDivision of Epidemiology and Biostatistics, School of Public Health, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Victor NdhlovuKamuzu University of Health Sciences, Blantyre, Malawi.
Mphatso D PhiriMalawi Liverpool Wellcome Programme, Blantyre, Malawi.
Ted CohenDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, CT, USA.
Caroline ColijnDepartment of Mathematics, Simon Fraser University, Burnaby, Canada.

Funding

Integrating genomic and spatial approaches for targeted control of HIV-associated tuberculosis epidemicsR01AI147854 · NIAID · YALE UNIVERSITY · PI COHEN, THEODORE H, SALOMON, JOSHUA A · 2020 to 2023
$3.1M
NIAID NIH HHS R01 AI147854Wellcome Trust
6 · The paper itself

Abstract

Genomic surveillance of pathogens important to public health, such as

Indexed as

Mycobacterium tuberculosisTuberculosisGenome, BacterialGenomicsHumansMalawiMolecular EpidemiologyPhylogenyPhylogeographyancestral state inferencegenomic epidemiologyMycobacterium tuberculosisphylogeneticstuberculosiswhole-genome sequencing

Identifiers

PMID41949012
PMCPMC13060038

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.