Evidence map›Paper›PMID 41943047›Full record

ArticleJournal of translational medicine2026

Intratumoral spatiotemporal heterogeneity of HPV DNA status in HPV-associated oropharyngeal squamous cell carcinoma with clinical record.

Bokyung Ahn, Chae Won Park, Joon Seon Song, Hee-Jin Lee, Wonkyung Kim, Yoon Se Lee, Young Ho Jung, Seung-Ho Choi, Soon Yuhl Nam, Sang Yoon Kim and 5 more

Abstract read
In one paragraph

Article in Journal of translational medicine, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Bokyung Ahn *Department of Pathology, Asan Medical Center, University of Ulsan College of Medicine, 88, Olympic-ro 43-gil, Songpa-gu, Seoul, 05505, Republic of Korea.
Chae Won Park *Department of Pathology, Asan Medical Center, University of Ulsan College of Medicine, 88, Olympic-ro 43-gil, Songpa-gu, Seoul, 05505, Republic of Korea.
Joon Seon SongDepartment of Pathology, Asan Medical Center, University of Ulsan College of Medicine, 88, Olympic-ro 43-gil, Songpa-gu, Seoul, 05505, Republic of Korea.
Hee-Jin LeeDepartment of Pathology, Asan Medical Center, University of Ulsan College of Medicine, 88, Olympic-ro 43-gil, Songpa-gu, Seoul, 05505, Republic of Korea.
Wonkyung KimDepartment of Pathology, Asan Medical Center, University of Ulsan College of Medicine, 88, Olympic-ro 43-gil, Songpa-gu, Seoul, 05505, Republic of Korea.
Yoon Se LeeDepartment of Otolaryngology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Republic of Korea.
Young Ho JungDepartment of Otolaryngology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Republic of Korea.
Seung-Ho ChoiDepartment of Otolaryngology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Republic of Korea.
Soon Yuhl NamDepartment of Otolaryngology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Republic of Korea.
Sang Yoon KimDepartment of Otolaryngology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Republic of Korea.
Ji-Hye OhBioinformatics Core Laboratory, Convergence Medicine Research Center, Asan Institute for Life Sciences, Asan Medical Center, Seoul, Republic of Korea.
Young Gwang KangDepartment of Pathology, Asan Medical Center, University of Ulsan College of Medicine, 88, Olympic-ro 43-gil, Songpa-gu, Seoul, 05505, Republic of Korea.
Da Eun OhBioinformatics Core Laboratory, Convergence Medicine Research Center, Asan Institute for Life Sciences, Asan Medical Center, Seoul, Republic of Korea.
Chang Ohk SungDepartment of Pathology, Asan Medical Center, University of Ulsan College of Medicine, 88, Olympic-ro 43-gil, Songpa-gu, Seoul, 05505, Republic of Korea. co.sung@amc.seoul.kr.ORCID 0000-0002-8567-456X
Kyung-Ja ChoDepartment of Pathology, Asan Medical Center, University of Ulsan College of Medicine, 88, Olympic-ro 43-gil, Songpa-gu, Seoul, 05505, Republic of Korea. kjc@amc.seoul.kr.

Funding

Asan Institute for Life Sciences, Asan Medical Center 2022IP0046, 2023IP0083-2 and 2024IP0082-1Korea Health Industry Development Institute HR21C0198National Research Foundation of Korea RS-2023-00275813, RS-2025-00557349National Research Foundation of Korea RS-2024-00338555
6 · The paper itself

Abstract

backgroundRecently, the heterogeneity of human papillomavirus (HPV) status within HPV-associated oropharyngeal squamous cell carcinoma (HPV-OPSCC) has garnered substantial attention. However, the origin and relevance of a subset of cancer cells with HPV-loss remain largely unknown.

methodsWe encountered seven HPV-OPSCCs with spatial heterogeneity identified by HPV-DNA in situ hybridization among 83 OPSCCs, including 48 HPV-OPSCCs. We analyzed the characteristics of HPV-loss and HPV-positive cancer cells using histomorphology and immunohistochemistry. Spatial transcriptomic profiling was performed to investigate the evolutionary dynamics and pathway alterations associated with the emergence of HPV-loss tumor cells, as well as the corresponding changes in the tumor microenvironment. Additionally, we evaluated the clinical prognosis of OPSCCs exhibiting intratumoral HPV-DNA heterogeneity.

resultsWe demonstrated that HPV-loss subsets originate from HPV-positive cancer cells and diverge into distinct lineages during spatiotemporal evolution. This transition was associated with hypoxia and PI3K/AKT/mTOR signaling. Although HPV-loss clones showed more aggressive features such as poor differentiation and strong p16 expression, the overall prognosis of patients with HPV-DNA spatial heterogeneity was comparable to those with homogeneous HPV status. This may be due to increased interferon signaling and elevated cytotoxic lymphocyte infiltration in HPV-loss clones, suggesting a loss of immune evasion. In contrast, HPV-positive clones retained immune evasion mechanisms, potentially mediated by Fibroblast Growth Factor Receptor 3 signaling.

conclusionsWe identified the emergence of HPV-loss clones in HPV-OPSCC and uncovered their spatiotemporal evolution characteristics, as well as their impact on the tumor microenvironment.

Indexed as

Carcinoma, Squamous CellDNA, ViralGenetic HeterogeneityHuman Papillomavirus VirusesOropharyngeal NeoplasmsPapillomaviridaePapillomavirus InfectionsFemaleHumansMaleMiddle AgedPhosphatidylinositol 3-KinasesPrognosisSignal TransductionTumor MicroenvironmentDNA, ViralPhosphatidylinositol 3-KinasesHPVMicroenvironmentOropharyngeal squamous cell carcinomaSpatial heterogeneitySpatial transcriptomics

Identifiers

PMID41943047
PMCPMC13181907

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.