Evidence map›Paper›PMID 41941633›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2026

Niche-dependent modular regulation of the stem cell transcriptome separates cell identity and potential.

Amelie Raz, Hafidh Hassan, Yukiko M Yamashita

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. QnAs with Yukiko Yamashita.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Amelie RazWhitehead Institute for Biomedical Research, Cambridge, MA 02142.
Hafidh HassanWhitehead Institute for Biomedical Research, Cambridge, MA 02142.
Yukiko M YamashitaWhitehead Institute for Biomedical Research, Cambridge, MA 02142.ORCID 0000-0001-5541-0216

Funding

Combinatorial signal integration in the maintenance and renewal of adult germline stem cell fateK99GM154143 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI Amelie Raz · 2025 to 2026
$326k
Reprogramming towards a germline stem cell fateF32GM143850 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI RAZ, AMELIE · 2021 to 2023
$205k
HHMI (HHMI) n/aHHS | NIH | National Institute of General Medical Sciences (NIGMS) 1F32GM143850-01HHS | NIH | National Institute of General Medical Sciences (NIGMS) 1K99GM154143-01A1NIGMS NIH HHS F32 GM143850NIGMS NIH HHS K99 GM154143
6 · The paper itself

Abstract

Adult stem cells maintain tissue homeostasis, yet are themselves vulnerable to loss. One common mechanism to replace lost stem cells is dedifferentiation, in which progeny revert to stem cell identity. It is a paradox how stem cells and progeny retain the same stem cell potential while exhibiting distinct current identities of self-renewal, differentiation, and dedifferentiation. Here, we show that the Drosophila male germline lineage solves this paradox via two parallel and complementary mechanisms to separate potential and identity. First, differentiating progeny maintain stem cell potency by inheriting perdurant stem cell mRNAs without actively transcribing them. Second, two known niche signals (Bmp and Jak-Stat) activate distinct sets of targets, defining three identities (self-renewal, differentiation, and dedifferentiation) based on the combination of their on/off states. Together, this study reveals how a pool of dedifferentiation-competent progeny is maintained to regenerate stem cells as needed without resulting in stem cell overproduction and resolves the puzzle of why most stem cell systems require multiple independent niche signals.

Indexed as

Stem Cell NicheStem CellsTranscriptomeAnimalsCell DedifferentiationCell DifferentiationCell LineageCell Self RenewalDrosophila melanogasterDrosophila ProteinsMaleSignal TransductionSTAT Transcription FactorsDrosophila ProteinsSTAT Transcription Factorsdedifferentiationstem cell nichestem cells

Identifiers

PMID41941633
PMCPMC13080026

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.