Evidence map›Paper›PMID 41940997›Full record

ArticleJournal of molecular modeling2026

MGPP-DL: deep learning approach for material graph properties prediction.

Outhman Abbassi, Hicham Labrim, Soumia Ziti, Mohammed Benaissa, Nassim Kharmoum

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Article in Journal of molecular modeling, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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5 · Who and what money

Authors and funding

5 authors.

Outhman AbbassiIPSS, Intelligent Processing and Security of Systems, Faculty of Science, Mohammed V University in Rabat, 1014 RP, Rabat, Morocco. outhmane.abbassi@um5r.ac.ma.
Hicham LabrimIPSS, Intelligent Processing and Security of Systems, Faculty of Science, Mohammed V University in Rabat, 1014 RP, Rabat, Morocco.
Soumia ZitiIPSS, Intelligent Processing and Security of Systems, Faculty of Science, Mohammed V University in Rabat, 1014 RP, Rabat, Morocco.
Mohammed BenaissaASE-ISA, National School of Applied Sciences-ENSA, Ibn Tofail University, 14000, Kénitra, Morocco.
Nassim KharmoumIPSS, Intelligent Processing and Security of Systems, Faculty of Science, Mohammed V University in Rabat, 1014 RP, Rabat, Morocco.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

contextThe discovery of semiconductor materials for photovoltaic and optoelectronic applications is limited by the computational cost of DFT calculations and the requirement for complete 3D crystal structures. Existing deep learning approaches, including graph neural networks (CGCNN, MEGNet, ALIGNN) and transformer architectures (Matformer, CrysCo), require structural information, limiting their applicability to hypothetical materials of which only the composition is known. We developed MGPP-DL (Materials Graph Property Prediction via Deep Learning), a structure-agnostic approach that predicts the band gap and formation energy directly from the chemical composition of the material structure. Evaluated on 389,000 materials from the Materials Project, MGPP-DL achieves unprecedented accuracy with mean absolute errors of 0.0178 eV/atom for formation energy and 0.0619 eV for band gap, representing a 67% improvement over state-of-the-art models. The model demonstrates a robust generalization (R

methodsChemical compositions are represented as graphs of completely connected elements with nodes encoding 33 elementary properties extracted via Pymatgen, including electronegativity, atomic radius, and stoichiometric coefficients. Three GNN layers with message passing refine the embeddings of elements (64-dimensional) by multi-scale aggregation. GNN output is processed by two EfficientNet blocks (dimension 128, expansion ratio 4) with squeeze-and-excitation attention mechanisms (reduction ratio 0.25). The training employed the optimizer Adam (learning rate 0.001), MSE loss, dropout (0.3), and batch standardization over 40 epochs (batch size 32). The Materials Project dataset (DFT-GGA, functional PBE) has been divided by scaffold methodology (70/15/15) to ensure structural diversity. IMPLEMENTATION: Python 3.10.12, TensorFlow 2.12.0/Keras (CUDA 11.8), trained on NVIDIA RTX 3080 GPU (10 GB VRAM), with Pymatgen 2023.8.10, NumPy 1.24.3, Pandas 2.0.3, Scikit-learn 1.3.0, Matplotlib 3.7.2, and Seaborn 0.12.2.

Indexed as

Deep learningDensity functional theoryEfficient netGraph neural networksHigh-throughput screeningMaterials discoveryMaterials graphScaffold splittingSemiconductor propertiesSqueeze-and-excitation attention

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.