Evidence map›Paper›PMID 41933035›Full record

ArticleScientific reports2026

LIF signaling pathway regulates the heterogeneous Sox2 transcriptional dynamics in mESCs.

Gaochen Jin, Emilia A Leyes Porello, Jingchao Zhang, J Andres Vidal, Bomyi Lim

Abstract read
In one paragraph

Article in Scientific reports, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Gaochen JinDepartment of Chemical and Biomolecular Engineering, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Emilia A Leyes PorelloDepartment of Chemical and Biomolecular Engineering, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Jingchao ZhangDepartment of Cell and Developmental Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
J Andres VidalDepartment of Chemical and Biomolecular Engineering, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Bomyi LimDepartment of Chemical and Biomolecular Engineering, University of Pennsylvania, Philadelphia, PA, 19104, USA. bomyilim@seas.upenn.edu.

Funding

Design principles and dynamic gene control in embryonic developmentR35GM133425 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Bomyi Lim · 2019 to 2026
$2.9M
Human Frontier Science Program LT000761/2019-LNIH HHS R35GM133425
6 · The paper itself

Abstract

The LIF signaling pathway is crucial for maintaining self-renewal and pluripotency in mESCs through regulation of factors like Sox2, yet its direct impact on Sox2 transcriptional dynamics remains elusive. Using PP7/PCP-mediated live imaging, we analyzed the transcriptional dynamics of Sox2 under LIF pathway perturbation at single-cell resolution. Removing LIF ligand or adding JAK inhibitor reduced the number of Sox2-active cells, while remaining Sox2-active cells exhibited decreased mRNA production. This reduction is characterized by smaller and less frequent transcriptional bursts, resulting in shorter active duration. Notably, LIF pathway perturbation decreased the number of pluripotent cells, with pluripotent marker-expressing cells showing higher Sox2 expression, suggesting a strong correlation between Sox2 levels and pluripotency maintenance. Additionally, Sox2 expression demonstrated transcriptional inheritance across cell cycles, with Sox2-active mother cells more likely to reactivate Sox2 post-mitosis – a memory mechanism maintained even during LIF pathway perturbation. Our findings reveal quantitative aspects of Sox2 regulation in pluripotency maintenance.

Indexed as

Embryonic Stem CellsLeukemia Inhibitory FactorSignal TransductionSOXB1 Transcription FactorsTranscription, GeneticAnimalsMicePluripotent Stem CellsLeukemia Inhibitory FactorLif protein, mouseSox2 protein, mouseSOXB1 Transcription Factors

Identifiers

PMID41933035
PMCPMC13194936

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.