Evidence map›Paper›PMID 41932553›Full record

ArticleToxicology and applied pharmacology2026

Nickel exposure disrupts epigenetic repression of developmental genes in mouse embryonic stem cells.

Beatrix Bradford, David Filipovic, Xiaoru Zhang, Viktoriia Goriainova, Suresh Cuddapah

Abstract read
In one paragraph

Article in Toxicology and applied pharmacology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Beatrix BradfordDivision of Environmental Medicine, Department of Medicine, New York University Grossman School of Medicine, New York, NY 10010, USA.
David FilipovicInstitute for Quantitative Health Science and Engineering, Division of Systems Biology, Michigan State University, East Lansing, MI 48824, USA.
Xiaoru ZhangDivision of Environmental Medicine, Department of Medicine, New York University Grossman School of Medicine, New York, NY 10010, USA.
Viktoriia GoriainovaDivision of Environmental Medicine, Department of Medicine, New York University Grossman School of Medicine, New York, NY 10010, USA.
Suresh CuddapahDivision of Environmental Medicine, Department of Medicine, New York University Grossman School of Medicine, New York, NY 10010, USA. Electronic address: suresh.cuddapah@nyulangone.org.

Funding

Integrative transcriptional and epigenomic modeling of xenobiotic-activated gene regulatory networksR01ES031937 · NIEHS · MICHIGAN STATE UNIVERSITY · PI BHATTACHARYA, SUDIN, CUDDAPAH, SURESH · 2020 to 2024
$2.4M
Persistent transcriptional changes induced by nickel through epigenetic alterationsR01ES031402 · NIEHS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI COSTA, MAX, CUDDAPAH, SURESH · 2020 to 2024
$2.1M
NIEHS NIH HHS R01 ES031402NIEHS NIH HHS R01 ES031937
6 · The paper itself

Abstract

Nickel (Ni) is a naturally occurring heavy metal whose environmental levels have been steadily rising due to industrial activities and the widespread use of Ni-containing products. Ni exposure poses significant health risks, and studies in vertebrate models and human populations link Ni to developmental toxicity. However, the mechanisms by which Ni perturbs early developmental programs remain poorly understood. Here, we examined the effects of Ni exposure on pluripotency in mouse embryonic stem cells (mESCs) maintained under pluripotency-supporting conditions. Ni exposure led to aberrant upregulation of genes associated with mesodermal and endodermal lineages, while ectodermal gene expression remained largely unaffected. However, the expression of core pluripotency factors was preserved, indicating that Ni does not induce differentiation but instead disrupts normal transcriptional control within the pluripotent state. Mechanistically, Ni exposure caused a selective loss of the repressive histone modification H3K27me3 at bivalent promoters of mesoderm-associated genes without altering global H3K27me3 levels. Pharmacological inhibition of H3K27me3 demethylases attenuated Ni-induced gene activation, suggesting that localized H3K27me3 removal contributes to this aberrant activation of developmental genes. ESCs normally exist as heterogeneous populations that dynamically fluctuate between naïve and lineage-primed pluripotent states. Our findings indicate that Ni exposure perturbs this equilibrium through aberrant activation of lineage-associated genes while core pluripotency remains preserved. Such dysregulation of early transcriptional programs may predispose cells to abnormal fate decisions. These findings suggest a mechanistic link between Ni exposure and developmental abnormalities.

Indexed as

Epigenesis, GeneticEpigenetic RepressionGene Expression Regulation, DevelopmentalGenes, DevelopmentalMouse Embryonic Stem CellsNickelAnimalsCell DifferentiationHistonesMiceHistonesNickelBivalencyEmbryonic stem cells (ESCs)H3K27me3Lineage-associated gene activationNickelPRC2

Identifiers

PMID41932553
PMCPMC13242682

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.