Evidence map›Paper›PMID 41929138›Full record

ArticlebioRxiv : the preprint server for biology2026

ATF4 Coordinates Transcriptomic and Structural Adaptations in Aging Muscle.

Amber Crabtree, Mohd Mabood Khan, Estevão Scudese, Calixto Pablo Hernandez Perez, Prasanna Venkhatesh, Andrea G Marshall, Benjamin Rodriguez, Edgar Garza López, Okwute M Ochayi, Estélio Henrique Martin Dantas and 26 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

36 authors.

Amber CrabtreeDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, 37232, USA.
Mohd Mabood KhanDepartment of Medicine, Division of Genetic Medicine & Clinical Pharmacology, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Estevão ScudeseDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, 37232, USA.
Calixto Pablo Hernandez PerezDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, 37232, USA.
Prasanna VenkhateshDepartment of Biology, Indian Institute of Science Education and Research (IISER) Tirupati, AP, 517619, India.
Andrea G MarshallDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, 37232, USA.
Benjamin RodriguezDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, 37232, USA.
Edgar Garza LópezDepartment of Internal Medicine, University of Iowa - Carver College of Medicine, Iowa City, IA, USA 52242.
Okwute M OchayiDepartment of Physiology, Faculty of Basic Medical Sciences, Baze University Abuja, Nigeria.
Estélio Henrique Martin DantasLaboratory of Biosciences of Human Motricity (LABIMH) of the Federal University of State of Rio de Janeiro (UNIRIO), Rio de Janeiro, Brazil.
Pamela MartinDepartment of Biomedical Sciences, School of Graduate Studies, Meharry Medical College, Nashville, TN 37208-3501, USA.
Matheus BaffiSport Sciences and Exercise Laboratory (LaCEE), Catholic University of Petrópolis (UCP), Brazil.
Fabiana ScartoniLaboratory of Biosciences of Human Motricity (LABIMH) of the Federal University of State of Rio de Janeiro (UNIRIO), Rio de Janeiro, Brazil.
Margaret MungaiDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, 37232, USA.
Kit NeikirkDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, 37232, USA.
Jennifer StreeterDepartment of Internal Medicine, University of Iowa - Carver College of Medicine, Iowa City, IA, USA 52242.
Renata O PereiraDepartment of Internal Medicine, University of Iowa - Carver College of Medicine, Iowa City, IA, USA 52242.
Dao Fu DaiDepartment of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Han LeDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, 37232, USA.
Harrison MobleyDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, 37232, USA.
Jeremiah AfolabiDepartment of Medicine, Division of Genetic Medicine & Clinical Pharmacology, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Bret C MobleyDepartment of Pathology, Vanderbilt University Medical Center, Nashville, TN, USA.
Celestine N WanjallaDivision of Infection Diseases, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
Duane HallDepartment of Internal Medicine, University of Iowa - Carver College of Medicine, Iowa City, IA, USA 52242.
Julia D BerryDepartment of Pathology, Vanderbilt University Medical Center, Nashville, TN, USA.
Oleg KovtunDepartment of Chemistry, Vanderbilt University, Nashville, TN, 37232, USA.ORCID 0000-0001-6809-9332
Jenny C SchaferDepartment of Cell and Developmental Biology, Vanderbilt University, Nashville, TN, 37232, USA.
Sean SchafferDepartment of Cell and Developmental Biology, Vanderbilt University, Nashville, TN, 37232, USA.
Prasanna KattiDepartment of Biology, Indian Institute of Science Education and Research (IISER) Tirupati, AP, 517619, India.
Chantell EvansDepartment of Cell Biology, Duke University School of Medicine, Durham, NC, 27708, USA.
André KinderArtur Sá Earp Neto University Center (UNIFASE-FMP), Petrópolis Medical School, Petrópolis, RJ, Brazil.
Joyonna Gamble-GeorgeDepartment of Computer Science, Whiting School of Engineering, Johns Hopkins University, Baltimore, MD, USA.
Melanie McReynoldsDepartment of Medicine, Division of Genetic Medicine & Clinical Pharmacology, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Annet KiraboDepartment of Medicine, Division of Genetic Medicine & Clinical Pharmacology, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Sepiso K MasengaDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, 37232, USA.ORCID 0000-0003-4376-5831
Antentor O HintonDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, 37232, USA.ORCID 0000-0002-7730-952X

Funding

Vanderbilt Diabetes Research CenterP30DK020593 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI OWEN P MCGUINNESS · 2012 to 2026
$29.3M
PRIDE: Functional and Translational Genomics of Blood DisordersR25HL106365 · NHLBI · AUGUSTA UNIVERSITY · PI PACE, BETTY SUE · 2010 to 2024
$5.2M
NHLBI NIH HHS R25 HL106365NIDDK NIH HHS P30 DK020593
6 · The paper itself

Abstract

Aging is associated with a progressive loss of skeletal muscle function, known as sarcopenia; however, the molecular mechanisms coordinating cellular stress responses and structural adaptations permissive of sarcopenia remain incompletely understood. In our previous studies, we found aging differentially impacted mitochondrial networks by muscle, suggesting unique stress thresholds and response activation. Here, we investigate the role of activating transcription factor 4 (ATF4), a master regulator of the integrated stress response (ISR), in aged quadriceps muscle using complementary patient and aging mouse models. Older adults exhibited a marked decrease in aerobic capacity, muscle strength, and endurance when compared with young participants. These results paralleled findings in aged mice, with significant loss of muscle mass across multiple hindlimb muscles. Ultrastructural analysis revealed substantial age-related changes in mitochondrial morphology, including increased volume, surface area, and branching index, as well as a shift toward larger, more complex mitochondria. Our data indicate that ATF4 binds directly to the promoter region of the gene encoding TFAM, suggesting a transcriptional regulatory relationship to support DNA stability. These structural and transcriptional changes likely impair oxidative capacity and drive a feed-forward cycle of mitochondrial dysfunction and ISR activation. Our findings indicate that ATF4 coordinates transcriptomic and structural adaptations in aging muscle, identifying the ISR pathway as a potential therapeutic target for preserving muscle function in older adults.

Indexed as

3D StructureAgingATF4MetabolismMitochondriaMuscleSkeletal

Identifiers

PMID41929138
PMCPMC13042081

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.