Evidence map›Paper›PMID 41928802›Full record

ArticleResearch square2026

Macromolecular crowding alters transcription: real-time measurements with SYBR Green II.

Suleyman Ucuncuoglu, Md Abul Kalam Azad, Narendar Kolimi, Laura Finzi, David Dunlap

Abstract readPreprint
In one paragraph

Article in Research square, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Suleyman UcuncuogluClemson University.
Md Abul Kalam AzadClemson University.
Narendar KolimiClemson University.
Laura FinziClemson University.
David DunlapClemson University.

Funding

Macromolecular Crowding effects on DNA mechanics, topology and transcriptionR35GM149296 · NIGMS · EMORY UNIVERSITY · PI Laura Finzi · 2023 to 2026
$1.5M
NIGMS NIH HHS R35 GM149296
6 · The paper itself

Abstract

Various factors affect transcription, including regulatory proteins, promoter sequences, ionic conditions, and nucleotide concentrations. Gel electrophoresis of radiolabeled RNA is a widely used assay to quantify transcript production in vitro. However, the use of radioactive reagents requires hazardous chemical training as well as specialized protocols and imaging systems. Moreover, dynamic monitoring of in vitro transcription could provide insight into conditions affecting the reaction. Widely available microplate readers and quantitative PCR instruments could be broadly adopted to study the kinetics and yields of transcription reactions with a suitable fluorescence assay. The SYBR Green II fluorophore has high affinity for RNA and can be used to monitor RNA production from

Identifiers

PMID41928802
PMCPMC13042168

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.