Evidence map›Paper›PMID 41927695›Full record

ArticleScientific reports2026

Metabolic reprogramming and functional trade-offs during domestication of Sechium edule.

Samuel David Espinosa-Torres, Jorge David Cadena-Zamudio, Ramón M Soto-Hernández, Lucero Del Mar Ruiz-Posadas, Jorge Cadena-Iñiguez, María Isabel Iñiguez-Luna, Rubén San Miguel Chávez

Abstract read
In one paragraph

Article in Scientific reports, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Foods (Basel, Switzerland) · 2026
    Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Samuel David Espinosa-TorresColegio de Postgraduados, Km. 36.5 Carretera México-Texcoco, Montecillo, Texcoco, 56264, Estado de Mexico, Mexico.
Jorge David Cadena-ZamudioCentro Nacional de Recursos Genéticos, Instituto Nacional de Investigaciones Forestales, Agrícolas y Pecuarias, Blvd. de la Biodiversidad #400 Rancho las Cruces, Tepatitlán de Morelos, 47600, Jalisco, México. cadena.jorge@inifap.gob.mx.ORCID http://orcid.org/0000-0002-2855-4561
Ramón M Soto-HernándezColegio de Postgraduados, Km. 36.5 Carretera México-Texcoco, Montecillo, Texcoco, 56264, Estado de Mexico, Mexico.ORCID http://orcid.org/0000-0001-8577-7991
Lucero Del Mar Ruiz-PosadasColegio de Postgraduados, Km. 36.5 Carretera México-Texcoco, Montecillo, Texcoco, 56264, Estado de Mexico, Mexico.ORCID http://orcid.org/0000-0002-4922-3710
Jorge Cadena-IñiguezGrupo Interdisciplinario de Investigación en Sechium edule en México, Agustín Melgar 10 Col. Niños Héroes, Texcoco, 56160, Estado de México, México.ORCID http://orcid.org/0000-0002-6427-0646
María Isabel Iñiguez-LunaGrupo Interdisciplinario de Investigación en Sechium edule en México, Agustín Melgar 10 Col. Niños Héroes, Texcoco, 56160, Estado de México, México.ORCID http://orcid.org/0000-0002-2017-429X
Rubén San Miguel ChávezColegio de Postgraduados, Km. 36.5 Carretera México-Texcoco, Montecillo, Texcoco, 56264, Estado de Mexico, Mexico.ORCID http://orcid.org/0000-0003-0187-5733

Funding

Colegio de Postgraduados Convocatoria 2024-03
6 · The paper itself

Abstract

Domestication has profoundly influenced the evolution of plant metabolism, shaping the balance between productivity and ecological resilience. To explore the biochemical consequences of this process, we performed an integrative metabolomic comparison between the domesticated Sechium edule var. albus minor and its wild relative S. edule 653-d. Using complementary non-targeted UHPLC-ESI-QTOF-MS and targeted HPLC analyses, we identified over 15,800 spectral features and 150 putative metabolites revealing a marked reorganization of metabolic networks. Principal component, hierarchical clustering, and tanglegram analyses confirmed a deep topological divergence between genotypes, indicating that domestication reprogrammed metabolite associations and reduced overall chemical connectivity. Pathway enrichment analysis showed that the domesticated genotype prioritized primary metabolism particularly lipid, nucleotide, and amino acid biosynthesis while the wild form retained a metabolism dominated by flavonoid, terpenoid, and phenylpropanoid pathways associated with defense, antioxidant activity, and environmental plasticity. Targeted quantification validated these patterns, evidencing a metabolic trade-off between nutritional optimization and stress resilience. Collectively, our results demonstrate that S. edule domestication entailed a functional shift from chemical diversity to energetic efficiency, providing a metabolomic framework to understand how artificial selection reshapes plant secondary metabolism and highlighting the value of wild germplasm for restoring resilience and nutraceutical potential in cultivated species.

Indexed as

DomesticationChromatography, High Pressure LiquidGenotypeMetabolic Networks and PathwaysMetabolic ReprogrammingMetabolomeMetabolomics

Identifiers

PMID41927695
PMCPMC13186967

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.