Evidence map›Paper›PMID 41924129›Full record

ArticlePeerJ2024

Evidence for sweep signatures in antibiotic-resistant strains in three species of bacteria.

Anjani Pradhananga, Lorena Benitez-Rivera, Candace Clark, Kaho H Tisthammer, Pleuni S Pennings

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in PeerJ, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Anjani Pradhananga *Biology, San Francisco State University, San Francisco, CA, United States of America.
Lorena Benitez-Rivera *Biology, San Francisco State University, San Francisco, CA, United States of America.
Candace ClarkBiology, San Francisco State University, San Francisco, CA, United States of America.
Kaho H TisthammerUniversity of California, Davis, Davis, CA, United States of America.
Pleuni S PenningsBiology, San Francisco State University, San Francisco, CA, United States of America.

Funding

SFSU MBRS - RISER25GM059298 · NIGMS · SAN FRANCISCO STATE UNIVERSITY · PI BAIRD, TEASTER T, BAYLISS, FRANK T · 1999 to 2021
$21.0M
UPGRADE OF COMMUNICATIONS INFRASTRUCTURET34GM008574 · NIGMS · SAN FRANCISCO STATE UNIVERSITY · PI BAYLISS, FRANK T, ESQUERRA, RAYMOND M. · 1996 to 2021
$14.5M
SFSU/UCSF M.S. Bridges to the Doctorate Program: cloud-based learning modules supplementT32GM142515 · NIGMS · SAN FRANCISCO STATE UNIVERSITY · PI BLAKE, NICQUET M.J., FUSE, MEGUMI M. · 2021 to 2025
$5.9M
Influence of SIV replication on TB progression and immunityR01AI134195 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI AMBROSE, ZANDREA, LIN, PHILANA LING · 2017 to 2021
$4.8M
NIAID NIH HHS R01 AI134195NIGMS NIH HHS R25 GM059298NIGMS NIH HHS T32 GM142515NIGMS NIH HHS T34 GM008574
6 · The paper itself

Abstract

Over the last decades antibiotic resistance has evolved and spread in many different bacterial species. From an evolutionary perspective, drug resistance is an adaptation to a new environment. Population genetic theory predicts that recent adaptations are associated with reduced diversity in the part of the population that carries the adaptive trait, due to a process known as selective sweeps. It is not known if this prediction holds for antibiotic resistance in bacterial species that infect humans. Here, we use a convenience sample of eight datasets covering three species of bacteria (

Indexed as

Anti-Bacterial AgentsDrug Resistance, BacterialEnterococcus faeciumEscherichia coliStaphylococcus aureusEvolution, MolecularGenetic VariationHumansSelection, GeneticAnti-Bacterial AgentsAntibiotic resistanceDiversityEnterococcus faeciumEscherichia coliSelective sweepSoft sweepStaphylococcus aureus

Identifiers

PMID41924129
PMCPMC13038054

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.