Evidence map›Paper›PMID 41923128›Full record

ArticleMobile DNA2026

Centromeric retrotransposons shape chromosomal evolution beyond pericentromeric regions.

Manuel Poretti, Terezie Mandáková, Rimjhim R Choudhury, Leo Wuetschert, Martin A Lysak, Christian Parisod

Abstract read
In one paragraph

Article in Mobile DNA, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Manuel PorettiDepartment of Biology, University of Fribourg, Fribourg, Switzerland.
Terezie MandákováInstitute of Experimental Biology, Faculty of Science, CEITEC - CEITEC - Central European Institute of Technology, Masaryk University, Brno, Czech Republic.
Rimjhim R ChoudhuryDepartment of Biology, University of Fribourg, Fribourg, Switzerland.
Leo WuetschertDepartment of Biology, University of Fribourg, Fribourg, Switzerland.
Martin A LysakInstitute of Experimental Biology, Faculty of Science, CEITEC - CEITEC - Central European Institute of Technology, Masaryk University, Brno, Czech Republic.
Christian ParisodDepartment of Biology, University of Fribourg, Fribourg, Switzerland. christian.parisod@unifr.ch.

Funding

Czech Science Foundation 21-07748LMasaryk University Grant Agency MUNI/R/1268/2022Swiss National Science Foundation 31003A_178938
6 · The paper itself

Abstract

backgroundTransposable elements (TEs) play a key role in shaping chromosomal evolution and are particularly abundant in regions with high sequence turnover, such as centromeres. However, the factors driving the distribution of centromeric TEs remain largely unknown. This knowledge gap limits our understanding of TE biology and their functional role within host genomes. In this study, we analyse newly assembled chromosome-scale genomes of four closely related Biscutella species.

resultsDespite substantial synteny, we observe considerable variability in the centromeric and flanking pericentromeric regions among species. By comparing the distribution of centromeric TEs in space and time, we identify specialized CRM elements that target active centromeres, surrounded by Athila copies. Beyond such TE dynamics shaping all chromosomes, arms bearing distal nucleolus organizer regions further show expansion of these centromeric TEs being associated with increased DNA methylation and reduced gene expression.

conclusionsOffering fresh insights into the evolutionary mechanisms shaping chromosome organization, this study highlights how the recurrent activity of centromeric TEs significantly impacts functionality and stability of adjacent chromosome regions, underscoring broader implications for understanding genome evolution.

Indexed as

Brassicaceaecentromerechromosome evolutionCRM retrotransposonstransposable elements.

Identifiers

PMID41923128
PMCPMC13169781

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.