Evidence map›Paper›PMID 41922840›Full record

ArticleNature microbiology2026

Chikungunya virus persists in joint-associated macrophages and promotes chronic disease in mice.

Kristen M Zarrella, Ryan M Sheridan, Brian C Ware, Bennett J Davenport, Mariana O L da Silva, Dariia Vyshenska, Aspen U Martin, Nick A May, Erin R Fish, Daniela Weiskopf and 4 more

Abstract read
In one paragraph

Article in Nature microbiology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
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  6. Article
  7. Review
  8. When viral RNA lingers in joints.Nature microbiology · 2026
    Article
  9. Review
  10. Article
  11. Article
  12. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Kristen M Zarrella *Department of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO, USA.ORCID http://orcid.org/0000-0003-3142-6664
Ryan M Sheridan *RNA Bioscience Initiative, University of Colorado School of Medicine, Aurora, CO, USA.
Brian C Ware *Department of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO, USA.
Bennett J DavenportDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO, USA.ORCID http://orcid.org/0000-0001-8155-191X
Mariana O L da SilvaDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO, USA.
Dariia VyshenskaVirology Division, Department of Laboratory Medicine and Pathology, University of Washington Medical Center, Seattle, WA, USA.
Aspen U MartinDepartment of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, CO, USA.
Nick A MayDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO, USA.ORCID http://orcid.org/0000-0002-8662-2091
Erin R FishDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO, USA.ORCID http://orcid.org/0000-0002-7011-2177
Daniela WeiskopfCenter for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-2968-7371
Jay R HesselberthRNA Bioscience Initiative, University of Colorado School of Medicine, Aurora, CO, USA.ORCID http://orcid.org/0000-0002-6299-179X
Daniel N StreblowVaccine and Gene Therapy Institute and Division of Pathobiology and Immunology, Oregon National Primate Research Center, Oregon Health and Science University, Beaverton, OR, USA.
Alex L GreningerVirology Division, Department of Laboratory Medicine and Pathology, University of Washington Medical Center, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-7443-0527
Thomas E MorrisonDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO, USA. thomas.morrison@cuanschutz.edu.ORCID http://orcid.org/0000-0002-1811-2938

Funding

Screening CoreU19AI109680 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI NELSON, JAY A · 2014 to 2018
$34.9M
TRAINING PROGRAM IN IMMUNOLOGYT32AI007405 · NIAID · UNIVERSITY OF COLORADO DENVER · PI Laurel L Lenz, Raul Martin Torres · 1991 to 2026
$10.5M
Large Scale T Cell Epitope Discovery:Global identification of epitopes derived from Zika (ZIKV), Chikungunya (CHIKV) viruses following natural infection and vaccination75N93019C00065 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI MITCHELL, MAYA · 2019 to 2023
$7.3M
Nanopore analysis of transfer RNA forms and functionsR35GM119550 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI Jay R Hesselberth · 2016 to 2026
$4.5M
Impairment of B cell Responses by Pathogenic Chikungunya VirusesR01AI141436 · NIAID · UNIVERSITY OF COLORADO DENVER · PI DIAMOND, MICHAEL S, MORRISON, THOMAS E · 2019 to 2023
$3.2M
Alphavirus Pathogenesis and ImmunityR01AI185051 · NIAID · UNIVERSITY OF COLORADO DENVER · PI Michael S Diamond, Thomas E Morrison · 2025 to 2026
$1.6M
Defining mechanisms of chronic CHIKV disease in joint associated tissueF32AI188869 · NIAID · UNIVERSITY OF COLORADO DENVER · PI ZARRELLA, KRISTEN · 2025 to 2025
$74k
NIAID NIH HHS 75N93019C00065NIAID NIH HHS F32 AI188869NIAID NIH HHS R01 AI141436NIAID NIH HHS R01 AI185051NIAID NIH HHS T32 AI007405NIAID NIH HHS U19 AI109680NIGMS NIH HHS R35 GM119550
6 · The paper itself

Abstract

Arthritogenic alphaviruses, including chikungunya virus (CHIKV), Mayaro virus and Ross River virus, cause long-lasting musculoskeletal pain and inflammation. However, the mechanisms driving chronic disease remain unclear. Here, we used single-cell RNA sequencing, spatial transcriptomics and flow cytometry to investigate joint-associated tissues in alphavirus-infected mice at a late stage of infection. We identified an accumulation of inflammatory macrophages in joint-associated tissues with elevated expression of inflammatory markers. These cells harbour CHIKV RNA, suggesting ongoing viral replication during chronic disease. We also identified an accumulation of CD4

Indexed as

Chikungunya FeverChikungunya virusJointsMacrophagesAnimalsCD4-Positive T-LymphocytesChronic DiseaseDisease Models, AnimalFemaleMiceMice, Inbred C57BLRNA, ViralVirus ReplicationRNA, Viral

Identifiers

PMID41922840
PMCPMC13171603

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.