Evidence map›Paper›PMID 41922355›Full record

ArticleNature communications2026

Manifold topological deep learning for biomedical data.

Xiang Liu, Zhe Su, Yongyi Shi, Yiying Tong, Ge Wang, Guo-Wei Wei

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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  6. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Xiang LiuDepartment of Mathematics, Michigan State University, East Lansing, MI, USA.
Zhe SuDepartment of Mathematics and Statistics, Auburn University, Auburn, AL, USA.ORCID 0000-0003-3499-6814
Yongyi ShiBiomedical Imaging Center, Rensselaer Polytechnic Institute, Troy, NY, USA.
Yiying TongComputer Science and Engineering, Michigan State University, East Lansing, MI, USA.ORCID 0000-0002-7929-4333
Ge WangBiomedical Imaging Center, Rensselaer Polytechnic Institute, Troy, NY, USA.ORCID 0000-0002-2656-7705
Guo-Wei WeiDepartment of Mathematics, Michigan State University, East Lansing, MI, USA. weig@msu.edu.ORCID 0000-0001-8132-5998

Funding

Cardiac CT DebloomingR01HL151561 · NHLBI · GENERAL ELECTRIC GLOBAL RESEARCH CTR · PI BUDOFF, MATTHEW J, DE MAN, BRUNO · 2020 to 2023
$3.8M
AI-based platform for predicting emerging vaccine-escape variants and designing mutation-proof antibodiesR01AI164266 · NIAID · UNIVERSITY OF GEORGIA · PI Guowei Wei, YONG-HUI ZHENG · 2022 to 2026
$2.7M
Constrained Disentanglement (CODE) Network for CT Metal Artifact Reduction in Radiation TherapyR01EB031102 · NIBIB · RENSSELAER POLYTECHNIC INSTITUTE · PI DE MAN, BRUNO, PAGANETTI, HARALD · 2021 to 2021
$2.6M
Adversarially Based Virtual CT Workflow for Evaluation of AI in Medical ImagingR01EB032716 · NIBIB · RENSSELAER POLYTECHNIC INSTITUTE · PI JIA, XUN, MUELLER, KLAUS · 2022 to 2025
$2.5M
Discovery-Driven Mathematics and Artificial Intelligence for Biosciences and Drug DiscoveryR35GM148196 · NIGMS · UNIVERSITY OF GEORGIA · PI Guowei Wei · 2023 to 2026
$1.5M
Synergistic integration of topology and machine learning for the predictions of protein-ligand binding affinities and mutation impactsR01GM126189 · NIGMS · MICHIGAN STATE UNIVERSITY · PI WEI, GUOWEI · 2018 to 2021
$1.4M
National Science Foundation (NSF) DMS2052983National Science Foundation (NSF) IIS-1900473NHLBI NIH HHS R01 HL151561NIAID NIH HHS R01 AI164266NIBIB NIH HHS R01 EB031102NIBIB NIH HHS R01 EB032716NIGMS NIH HHS R01 GM126189NIGMS NIH HHS R35 GM148196
6 · The paper itself

Abstract

Recently, topological deep learning (TDL), which integrates algebraic topology with deep neural networks, has achieved significant success in processing point-cloud data and has emerged as a promising paradigm in data science. However, TDL has not been extended to differentiable-manifold data, including images, due to the challenges introduced by differential topology. We address this challenge by introducing a manifold topological deep learning (MTDL) framework. To apply Hodge theory, we integrate it into a streamlined convolutional neural network within the MTDL framework. In this framework, original images are represented as smooth manifolds with vector fields that are decomposed into three orthogonal components based on Hodge theory. These components are then concatenated to form an input image for the convolutional neural network architecture. The performance of MTDL is evaluated using the MedMNIST v2 benchmark database, which comprises 717,287 biomedical images from eleven 2D and six 3D datasets. MTDL significantly outperforms other competing methods, extending TDL to a wide range of data on smooth manifolds.

Indexed as

Deep LearningImage Processing, Computer-AssistedAlgorithmsConvolutional Neural NetworksDatabases, FactualHumansNeural Networks, Computer

Identifiers

PMID41922355
PMCPMC13212600

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.