Evidence map›Paper›PMID 41918781›Full record

ArticleACS catalysis2025

Using Yield Profiles to Study Reaction Mechanism.

Kalyana B Duggal, Emmanuel Moya Cruz, Adriana L Jemison, Yaning Liu, Grace O DeCostanza, Cameron B Berlin, Paige E Piszel, Brandon J Orzolek, Weihao Zhu, Madeline E Rotella and 1 more

Abstract read
In one paragraph

Article in ACS catalysis, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Kalyana B DuggalDepartment of Chemistry, Roy and Diana Vagelos Laboratories, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Emmanuel Moya CruzDepartment of Chemistry, Roy and Diana Vagelos Laboratories, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Adriana L JemisonDepartment of Chemistry, Roy and Diana Vagelos Laboratories, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Yaning LiuDepartment of Chemistry, Roy and Diana Vagelos Laboratories, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Grace O DeCostanzaDepartment of Chemistry, Roy and Diana Vagelos Laboratories, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Cameron B BerlinDepartment of Chemistry, Roy and Diana Vagelos Laboratories, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Paige E PiszelDepartment of Chemistry, Roy and Diana Vagelos Laboratories, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Brandon J OrzolekDepartment of Chemistry, Roy and Diana Vagelos Laboratories, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Weihao ZhuDepartment of Chemistry, Roy and Diana Vagelos Laboratories, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Madeline E RotellaDepartment of Chemistry, Roy and Diana Vagelos Laboratories, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Marisa C KozlowskiDepartment of Chemistry, Roy and Diana Vagelos Laboratories, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.

Funding

Computation and Development of New, Enabling Synthetic MethodsR35GM131902 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Marisa C Kozlowski · 2019 to 2026
$4.5M
Computational Methods for Selective CatalysisR01GM087605 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI KOZLOWSKI, MARISA C · 2010 to 2019
$2.4M
Targeting Nucleic Acid Junctions with Small MoleculesR01GM118510 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI CHENOWETH, DAVID MICHAEL · 2016 to 2020
$1.6M
Purchase of a Mass Directed Liquid ChromatographS10OD011980 · OD · UNIVERSITY OF PENNSYLVANIA · PI KOZLOWSKI, MARISA C · 2012 to 2012
$372k
Time-Of-Flight Instrument with Variable Ionization SourcesS10RR023444 · NCRR · UNIVERSITY OF PENNSYLVANIA · PI DMOCHOWSKI, IVAN JULIAN · 2007 to 2007
$308k
Molecular Dynamics Investigation of the Reactivity of Alkyl Radicals in Transition Metal-Catalyzed TransformationsK99GM155549 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI ROTELLA, MADELINE · 2024 to 2025
$200k
NCRR NIH HHS S10 RR023444NIGMS NIH HHS K99 GM155549NIGMS NIH HHS R01 GM087605NIGMS NIH HHS R01 GM118510NIGMS NIH HHS R35 GM131902NIH HHS S10 OD011980
6 · The paper itself

Abstract

Understanding reaction mechanisms can help to optimize efficiency, which allows industrially important molecules to be synthesized at a lower cost. Determining mechanisms, however, can be time consuming and resource-intensive. In this work, we outline an expeditious method to differentiate reaction mechanisms by means of unsupervised learning. With this technique, reaction "profiles" are created from the yields of a set of substrates subjected to several different reaction conditions. The resultant profiles are clustered by similarity to reveal mechanistic relationships. We have benchmarked this method with elimination reaction mechanisms, and used it to explore mechanistic relationships among C-H activation and phenol cross coupling catalysts. We determined that our method successfully categorizes elimination reaction mechanisms. Additionally, we found that our method was able to correct mechanistic assignments in C-H activation chemistry, previously misassigned due to the swift progress and discovery of previously unknown mechanisms in the field. Our method can be used to quickly hypothesize a mechanism for C-H activation catalysts with only four experiments. We also predicted potential similarities in phenol oxidative cross coupling catalysts that are mechanistically not well understood. Overall, this method provides a tool that can complement existing methods to study reaction mechanism.

Indexed as

C–H ActivationData-DrivenEliminationPhenol CouplingReaction MechanismUnsupervised Learning

Identifiers

PMID41918781
PMCPMC13035351

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.