ArticlePLoS computational biology2026
ARNy plotter: A comprehensive web server for RNA ensemble structural analysis and visualization.
Article in PLoS computational biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Authors and funding
3 authors.
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Abstract
Analyzing RNA structural ensembles, whether derived from molecular dynamics, enhanced sampling techniques, or experimental data, poses significant challenges due to the intrinsic flexibility and diverse conformational landscapes of RNA. We present ARNy Plotter, a web-based platform designed for comprehensive analysis and visualization of RNA structural ensembles. ARNy Plotter integrates multiple state-of-the-art methods into a unified, user-friendly environment, enabling intuitive examination of RMSD and eRMSD distributions, torsion-angle variability, dynamic secondary-structure patterns, contact-frequency networks, and multidimensional conformational landscapes. By leveraging MDAnalysis, Barnaba, and foRNA, the platform supports all major trajectory and ensemble formats while offering real-time 3D visualization via MolStar. Unlike existing tools that focus primarily on static structures or provide limited dynamic analysis, ARNy Plotter allows in-depth exploration of conformational transitions and population distributions within RNA ensembles, and facilitates result sharing without distributing full datasets. This platform addresses the growing need for accessible, comprehensive, and interactive tools for RNA structural biology. ARNy Plotter is freely available at https://arny-plotter.rpbs.univ-paris-diderot.fr/, requires no installation or registration, and can also be run offline with a local webserver, including an API for automated figure generation.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.