Evidence map›Paper›PMID 41914496›Full record

ArticleNucleic acids research2026

TRF2-RAP1 inhibits homology-directed repair of telomeres by promoting BLM-mediated removal of telomere R-loops.

Fengshan Liang, Sandy Chang

Abstract read
In one paragraph

Article in Nucleic acids research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Fengshan LiangDepartment of Laboratory Medicine, Yale University School of Medicine, 330 Cedar St., New Haven, CT 06520, United States.
Sandy ChangDepartment of Laboratory Medicine, Yale University School of Medicine, 330 Cedar St., New Haven, CT 06520, United States.ORCID 0000-0002-9560-1671

Funding

Mechanisms regulating telomere length, protection and replicationR35GM156405 · NIGMS · YALE UNIVERSITY · PI Sandy S Chang · 2025 to 2026
$866k
Department of Defense BC210086Department of Defense W81XWH191005NIGMS NIH HHS R35 GM156405NIH HHS R35 GM156405NIH HHS RO1 GM141350
6 · The paper itself

Abstract

The telomere long noncoding RNA TERRA forms R-loops in vitro at telomeres in a RAD51AP1-dependent manner. In classic DNA double-strand break repair, RAD51AP1 promotes R-loop formation and enables RAD51 to form D-loops by promoting the invasion of local RNA transcripts into donor DNA to form DNA-RNA (DR)-loops. We have previously shown that cells lacking the basic domain of TRF2 and functional RAP1 accumulate telomere D-loops, resulting in homology-directed repair (HDR)-mediated telomere-telomere clustering and formation of ultrabright telomeres (UTs). TRF2B also cooperates with RAP1 to repress telomere R-loop formation in UTs. TERRA has been shown to promote telomere HDR, associating telomeres during R-loop formation. However, the mechanism behind TERRA-mediated telomere HDR and how the TRF2-RAP1 complex regulates telomere R-loops remain unclear. Using reconstituted biochemical systems, we found that RAD51AP1 and TERRA-dependent R-loops promote RAD51-mediated telomere D-loop formation in a TERRA length- and sequence-dependent manner. Specifically, RAD51-ssDNA filaments capture telomere R-loops preferentially over dsDNA. We also discovered that BLM's interaction with the TRF2-RAP1 complex is required to promote BLM helicase-mediated unwinding of telomere R-loops. Importantly, BLM-deficient cells and cells reconstituted with BLM mutants unable to interact with TRF2 accumulate telomere R-loops in UTs. Our findings highlight a novel mechanism revealing that the TRF2-RAP1-BLM complex removes R-loops at telomeres to inhibit the generation of telomere D-loops, thus repressing telomere HDR and UT formation.

Indexed as

Recombinational DNA RepairRecQ HelicasesR-Loop StructuresTelomereTelomere-Binding ProteinsTelomeric Repeat Binding Protein 2DNA-Binding ProteinsHumansRad51 RecombinaseRNA-Binding ProteinsShelterin ComplexBloom syndrome proteinDNA-Binding ProteinsRAD51AP1 protein, humanRAD51 protein, humanRad51 RecombinaseRecQ HelicasesRNA-Binding ProteinsShelterin ComplexTelomere-Binding ProteinsTelomeric Repeat Binding Protein 2TERF2 protein, human

Identifiers

PMID41914496
PMCPMC13036488

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.