Evidence map›Paper›PMID 41910805›Full record

ArticleJournal of molecular modeling2026

Effect of carboxymethyl substitution position on urea interaction with carboxymethyl chitosan: a density functional theory study.

Parsaoran Siahaan, Putri D W Karimah, Muhammad B Abid, Dwi Hudiyanti, Suci Z Hildayani, Aditya W Sakti, Daru S B Anugrah

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Article in Journal of molecular modeling, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Parsaoran Siahaan *Department of Chemistry, Faculty of Science and Mathematics, Diponegoro University, Semarang, 50275, Indonesia. siahaan.parsaoran@live.undip.ac.id.
Putri D W Karimah *Department of Chemistry, Faculty of Science and Mathematics, Diponegoro University, Semarang, 50275, Indonesia.
Muhammad B AbidDepartment of Chemistry, Faculty of Science and Mathematics, Diponegoro University, Semarang, 50275, Indonesia.
Dwi HudiyantiDepartment of Chemistry, Faculty of Science and Mathematics, Diponegoro University, Semarang, 50275, Indonesia.
Suci Z HildayaniResearch Center for Computing, National Research and Innovation Agency (BRIN), Bandung, 40135, Indonesia.
Aditya W SaktiGlobal Center for Science and Engineering, Waseda University, Tokyo, Japan.
Daru S B AnugrahBiotechnology Study Program, School of Bioscience, Technology, and Innovation, Atma Jaya Catholic University of Indonesia, BSD Campus, Tangerang, 15345, Indonesia.

Funding

Faculty of Sciences and Mathematics of Diponegoro University 27.H/UN7.F8/PP/II/2025
6 · The paper itself

Abstract

contextAmong natural polymers, chitosan has gained considerable attention due to its excellent hemocompatibility and ability to enhance urea transport. Modifying chitosan into carboxymethyl chitosan (CMCs) enhances the number of active sites for hydrogen bonding, leading to greater selectivity toward urea molecules. The position of carboxymethyl substitution influences the physicochemical properties of CMCs, including hydrogen-bonding ability and molecular interactions with urea. Theoretical calculations are employed in this study to elucidate the role of carboxymethylation position in governing CMCs…urea interactions and membrane performance. The results indicate that O-substituted carboxymethyl chitosan exhibits the most favorable interaction energies and forms cyclic or multiple hydrogen bonds with urea, whereas N-substituted derivatives show weaker stabilization. Quantum reactivity descriptors reveal enhanced electronic stability for O-substituted complexes and increased reactivity for N-substituted systems. Topological and bond strength analyses consistently confirm stronger and more localized hydrogen bonding in O-containing carboxymethyl chitosan. These findings provide molecular-level insights for optimizing carboxymethyl chitosan-based hemodialysis membranes.

methodsThe interactions of O-CMCs, N-CMCs, N,O-CMCs, and N,N-CMCs with urea were investigated using density functional theory (DFT) at the B3LYP-D3/6-31++g(d,p) level of theory in water medium. All of the quantum calculations were performed using ORCA 6.0.0. The semi-empirical dispersion correction (DFT-D), developed by Grimme, in its latest D3 version was applied. The solvent effect was modeled using the solvation model based on density (SMD) implemented through the conductor-like polarizable continuum model (CPCM) framework. Intermolecular interactions were analyzed through frontier molecular orbital analysis, natural bond orbital (NBO), non-covalent interaction-reduced density gradient (NCI-RDG), quantum theory of atoms in molecules (QTAIM), and intrinsic bond strength index (IBSI) approaches.

Indexed as

Carboxymethyl chitosanDFTHydrogen bondingIntermolecular interactions

Identifiers

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.