Evidence map›Paper›PMID 41901039›Full record

ReviewLife (Basel, Switzerland)2026

Next-Generation Genotyping: Innovations Driving Plant Genomic Improvement.

Valeriya Kostyukova, Roza Kenzhebekova, Egor Protsenko, Bakyt Dulat, Marina Khusnitdinova, Dilyara Gritsenko

Abstract readReview
In one paragraph

Review in Life (Basel, Switzerland), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Valeriya KostyukovaLaboratory of Molecular Biology, Institute of Plant Biology and Biotechnology, Almaty 050040, Kazakhstan.ORCID 0000-0002-8922-964X
Roza KenzhebekovaLaboratory of Molecular Biology, Institute of Plant Biology and Biotechnology, Almaty 050040, Kazakhstan.ORCID 0000-0003-4343-5402
Egor ProtsenkoLaboratory of Molecular Biology, Institute of Plant Biology and Biotechnology, Almaty 050040, Kazakhstan.ORCID 0009-0007-6979-7387
Bakyt DulatLaboratory of Molecular Biology, Institute of Plant Biology and Biotechnology, Almaty 050040, Kazakhstan.ORCID 0009-0000-7000-6887
Marina KhusnitdinovaLaboratory of Molecular Biology, Institute of Plant Biology and Biotechnology, Almaty 050040, Kazakhstan.
Dilyara GritsenkoLaboratory of Molecular Biology, Institute of Plant Biology and Biotechnology, Almaty 050040, Kazakhstan.ORCID 0000-0001-6377-3711

Funding

Ministry of Agriculture of the Republic of Kazakhstan BR22887230 "Development of an effective population management system for quarantine pests, with limited distribution in the Republic of Kazakhstan"
6 · The paper itself

Abstract

In recent years, plant genotyping has been shifting from the accumulation of whole-genome data toward their effective use in breeding programs This review examines key genotyping platforms, including single-nucleotide polymorphism (SNP) arrays, reduced-representation sequencing methods such as genotyping-by-sequencing (GBS) and restriction site-associated DNA sequencing (RAD-seq), targeted genotyping approaches, and whole-genome sequencing (WGS), analyzing their informativeness, cost, and computational limitations. The transition to pangenome-based genotyping and graph genomes is discussed, as these approaches reduce reference bias and increase sensitivity for detecting structural variants, introgressions, and rare alleles that are important for adaptation and breeding. The growing role of AI/ML is highlighted in modeling complex genotype-phenotype relationships, integrating genomic and phenotypic data, and improving the accuracy and interpretability of genomic predictions.

Indexed as

GBSgenomic selection (GS)genotypinggraph genomesRAD-seqSNP arrayswhole-genome sequencing (WGS)

Identifiers

PMID41901039
PMCPMC13027703

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.