Evidence map›Paper›PMID 41892369›Full record

ArticleEpigenomes2026

Epigenetics of Genes Displaying High and Preferential Expression in Myoblasts.

Kenneth C Ehrlich, Michelle Lacey, Sriharsa Pradhan, Melanie Ehrlich

Abstract read
In one paragraph

Article in Epigenomes, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Kenneth C EhrlichCenter for Bioinformatics and Genomics, Tulane University Health Sciences Center, New Orleans, LA 70112, USA.
Michelle LaceyDepartment of Mathematics, Tulane University, New Orleans, LA 70118, USA.
Sriharsa PradhanGenome Biology Division, New England Biolabs, Ipswich, MA 01938, USA.ORCID 0000-0003-1710-0588
Melanie EhrlichCenter for Bioinformatics and Genomics, Tulane University Health Sciences Center, New Orleans, LA 70112, USA.ORCID 0000-0002-8187-4476

Funding

National Institutes of Health United States NS04885
6 · The paper itself

Abstract

BACKGROUND/

objectivesGenome-wide studies of differential DNA methylation often focus on its role in turning transcription on or off. Here we report some atypical epigenetic/transcription relationships for 92 genes that are highly and preferentially expressed in primary human myoblasts relative to heterologous cell cultures.

methodsWe compared methylomes and myoblast-specific differentially methylated regions (DMRs) with methylomes, chromatin profiles, and transcriptomes for many different cell populations.

resultsWe found that myoblast-associated promoter hypomethylation was unusually prevalent among the 92 myoblast-preferential genes. Sometimes this promoter hypomethylation was seen as a myoblast-associated extension of their constitutively unmethylated region at a CpG island. All 92 genes showed some myoblast-specific hypomethylation, including 32 genes at tissue-specific super-enhancers or broad H3K4-trimethylated promoters. Myoblast hypermethylated DMRs were also associated with almost half of the myoblast-preferential genes. These hypermethylated DMRs were often in intragenic locations embedded in H3K36-trimethylated chromatin in myoblasts.

conclusionsOur analysis suggests that some of the hypermethylated DMRs repress cryptic, alternative, or adjacent promoters. Myoblast hypermethylated DMRs may also downmodulate expression in myoblasts to avoid yet higher RNA levels found in adult or fetal skeletal muscle tissue. The epigenetic insights that were obtained can help elucidate the transcription regulation of some of these genes (e.g.,

Indexed as

alternative promotersasymmetry enhancer (ASE)broad H3K4me3 domainscryptic promotersenhancersenzymatic methyl-seq (EM-seq)myoblastsskeletal musclesuper-enhancerswhole-genome bisulfite sequencing (WGBS)

Identifiers

PMID41892369
PMCPMC13025873

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.