Evidence map›Paper›PMID 41890110›Full record

ArticlebioRxiv : the preprint server for biology2026

A comprehensive computational analysis investigating the relationships between phage codon usage, infection style, and number of tRNA genes.

Nykki D Ross, Sarah M Doore

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Nykki D RossDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL 32611.
Sarah M DooreDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL 32611.ORCID 0000-0002-7672-2355

Funding

Mechanisms of interaction between bacteriophage and their hosts throughout the infection cycleR01AI170608 · NIAID · UNIVERSITY OF FLORIDA · PI DOORE, SARAH M · 2022 to 2025
$1.8M
NIAID NIH HHS R01 AI170608
6 · The paper itself

Abstract

It has been known for decades that bacteriophages encode tRNA genes, but their function and the factors contributing to their acquisition and retention are unclear. Although tRNAs are found in a variety of phages infecting a variety of bacteria, many large-scale computational studies investigating tRNA acquisition and retention in phages are specific to

Identifiers

PMID41890110
PMCPMC13015707

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.