Evidence map›Paper›PMID 41889912›Full record

ArticlebioRxiv : the preprint server for biology2026

Tonsillar expression quantitative trait loci verify and expand genetic contributors to childhood atopic diseases.

Kim Lorenz, Samuel Yoon, Carole Le Coz, Karen Zur, Andrew Wells, Neil Romberg, Benjamin F Voight

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Kim LorenzDepartment of Genetics, University of Pennsylvania - Perelman School of Medicine, Philadelphia, PA, USA.ORCID 0000-0001-8674-2942
Samuel YoonYale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-9151-1660
Carole Le CozToulouse Institute for Infectious and Inflammatory Diseases, Université de Toulouse, INSERM, CNRS, Infinity, Toulouse, France.ORCID 0000-0002-9228-5896
Karen ZurDivision of Pediatric Otolaryngology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID 0000-0002-9045-6559
Andrew WellsCenter for Spatial and Functional Genomics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID 0000-0002-3630-2145
Neil RombergDivision of Allergy and Immunology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID 0000-0002-1881-5318
Benjamin F VoightDepartment of Genetics, University of Pennsylvania - Perelman School of Medicine, Philadelphia, PA, USA.ORCID 0000-0002-6205-9994

Funding

Translational Research Support CoreP30ES013508 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI A. Clementina Mesaros · 2006 to 2026
$35.3M
An interactive resource to generate and provide integrated knowledge of the human pancreasU24DK138512 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Noel P Burtt, Jason Flannick · 2024 to 2026
$9.6M
Functional Mechanisms of T1D Risk Variants and their Target Genes using 3D Epigenomics and Single Cell ApproachesR01DK122586 · NIDDK · UNIVERSITY OF VIRGINIA · PI GRANT, STRUAN F A, RICH, STEPHEN S. · 2019 to 2022
$4.8M
Mechanisms of autoimmune disease risk in IL2/IL2RA-dependent immune toleranceR01AI154773 · NIAID · CHILDREN'S HOSP OF PHILADELPHIA · PI CAMPBELL, DANIEL J, WELLS, ANDREW D · 2021 to 2025
$3.8M
Promoter interactome-aided mapping of unexplored CVID genetic landscapesR01AI146026 · NIAID · CHILDREN'S HOSP OF PHILADELPHIA · PI ROMBERG, NEIL DAVID · 2019 to 2023
$2.9M
The molecular circuits controlling human T follicular regulatory cell developmentR01AI179680 · NIAID · CHILDREN'S HOSP OF PHILADELPHIA · PI NEIL DAVID ROMBERG · 2025 to 2026
$1.6M
Genetic determinates of SPI1 expression and activity in human germinal center B cellsR01AI184976 · NIAID · CHILDREN'S HOSP OF PHILADELPHIA · PI NEIL DAVID ROMBERG · 2025 to 2026
$1.6M
NIAID NIH HHS R01 AI146026NIAID NIH HHS R01 AI154773NIAID NIH HHS R01 AI179680NIAID NIH HHS R01 AI184976NIDDK NIH HHS R01 DK122586NIDDK NIH HHS U24 DK138512NIEHS NIH HHS P30 ES013508
6 · The paper itself

Abstract

The spectrum of causal variants, mechanisms, and immunologic gene networks that influence pediatric atopic traits are not completely understood. Human genetic variation associated with transcript abundance (eQTLs) can help to advance our understanding, yet prior work has focused on profiling immune cell populations collected from peripheral blood primarily in adult populations, leaving uncharacterized tissue-resident lymphocytes collected from children. Here, we paired genotyping with gene expression profiling across four populations of tonsil-derived immune cell types - including previously uncharacterized germinal center B cells - collected from 103 children across development (ages 1-18). Using these data, we report cell-type specific gene networks and identify 13,393 eGenes (1,793 eGenes not previously reported in similar datasets) influenced by 27,603 eQTLs (5,199 not previously reported). We link discovered eQTLs to associations identified in pediatric and adult asthma and atopy traits, nominating 78 eGenes like

Identifiers

PMID41889912
PMCPMC13015460

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.