Evidence map›Paper›PMID 41889805›Full record

ArticlebioRxiv : the preprint server for biology2026

A Surfactant Cocktail Overcomes Air-Water Interface Artifacts in Single-Particle CryoEM.

Suzanne E Enos, Brian D Cook, Hamidreza Rahmani, Sarah M Narehood, Yizhou Li, Inga C Kuschnerus, Trevor H Redford, Peter Dukakis, Daniel Ji, Maxwell J Bachochin and 2 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Suzanne E EnosDepartment of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093.ORCID 0000-0001-8761-7457
Brian D CookDepartment of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093.ORCID 0000-0002-5777-3464
Hamidreza RahmaniDepartment of Integrative Structural and Computational Biology, Scripps Research, La Jolla, CA 92037.ORCID 0000-0003-0222-6989
Sarah M NarehoodDepartment of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093.ORCID 0000-0001-6822-8608
Yizhou LiDepartment of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093.ORCID 0009-0000-5502-4243
Inga C KuschnerusUniversity of California, San Diego Cryo-EM Facility, University of California, San Diego, La Jolla, CA 92093.ORCID 0000-0002-4453-6849
Trevor H RedfordDepartment of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093.ORCID 0009-0001-6633-5976
Peter DukakisDepartment of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093.ORCID 0009-0003-0253-8090
Daniel JiDepartment of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093.ORCID 0009-0003-2008-9583
Maxwell J BachochinDepartment of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093.ORCID 0000-0002-0989-1538
Danielle A GrotjahnDepartment of Integrative Structural and Computational Biology, Scripps Research, La Jolla, CA 92037.ORCID 0000-0001-5908-7882
Mark A HerzikDepartment of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093.ORCID 0000-0001-6653-6682

Funding

ChimeraX -- Next Generation Visualization and Analysis Software for Multiscale ModelingR01GM129325 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2018 to 2025
$5.2M
Training in Multi-Scale Analysis of Biological Structure and FunctionT32EB009380 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Andrew D. McCulloch, Padmini Rangamani · 2009 to 2026
$4.8M
Molecular Biophysics Training Grant at UC San DiegoT32GM139795 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Galia Debelouchina, ELIZABETH A. KOMIVES · 2021 to 2026
$3.0M
Towards an Atomistic Understanding of Mitochondrial Protein Biogenesis (Equipment Supplement)R35GM138206 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HERZIK, MARK ANTHONY · 2020 to 2024
$2.1M
Developing graphene grids to overcome air-water-interface issuesR21GM154216 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI GROTJAHN, DANIELLE ANN · 2024 to 2025
$506k
Chameleon Sample Preparation Device for Cryo-EMS10OD032471 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LESCHZINER, ANDRES · 2022 to 2022
$420k
NIBIB NIH HHS T32 EB009380NIGMS NIH HHS R01 GM129325NIGMS NIH HHS R21 GM154216NIGMS NIH HHS R35 GM138206NIGMS NIH HHS T32 GM139795NIH HHS S10 OD032471
6 · The paper itself

Abstract

Single-particle cryogenic electron microscopy (cryoEM) is a widely used technique for structure determination of biomacromolecules to near-atomic resolution. Random distributions of these molecules in vitrified ice are necessary to accumulate enough two-dimensional views to generate a complete three-dimensional (3-D) reconstruction. However, interactions between the sample and the air-water interface (AWI) that occur during vitrification often bias the views of the sample, a phenomenon termed preferred orientation, limiting our ability to obtain 3-D reconstructions. Surfactants are often used as sample additives to prevent AWI-induced deterioration, but no general strategy exists for surfactant choice, requiring laborious screening for each sample. To circumvent these issues, we developed SurfACT, a cocktail of diverse surfactants with distinct physicochemical properties that limits AWI-dependent sample denaturation and orientation bias, while mitigating individual surfactant-specific drawbacks. Here we demonstrate SurfACT's effectiveness with four proteins plagued by AWI-induced issues, including two species of hemagglutinin (HA), molybdenum-iron protein (MoFeP) from the nitrogenase enzyme, and aldolase. All four samples show drastically improved viewing distribution and map completeness when SurfACT is applied. Cryogenic electron tomography demonstrates that SurfACT redistributes particles from the AWI into the bulk ice, driving signal recovery and inhibiting denaturation. This versatile sample additive minimizes sample-specific screening and expands the capabilities and range of suitable samples for cryoEM.

Identifiers

PMID41889805
PMCPMC13015420

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.