Evidence map›Paper›PMID 41877120›Full record

ArticleBMC biotechnology2026

Systematic engineering of Escherichia coli for biosynthesis of 3-hydroxypropionic acid from glucose and malonate.

Yingying Wang, Meihui Cao, Mei Hu, Hengrui Xu, Yafei Du, Changxing Sun, Lingfei Kong, Yu Luo, Xiaoyu Liu, Jianming Yang and 1 more

Abstract read
In one paragraph

Article in BMC biotechnology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yingying Wang *Energy-Rich Compounds Production by Photosynthetic Carbon Fixation Research Center, Shandong Provincial Key Laboratory of Microbial Resource Exploration and Innovative Utilization, College of Life Sciences, Qingdao Agricultural University, Qingdao, 266109, China.
Meihui Cao *Energy-Rich Compounds Production by Photosynthetic Carbon Fixation Research Center, Shandong Provincial Key Laboratory of Microbial Resource Exploration and Innovative Utilization, College of Life Sciences, Qingdao Agricultural University, Qingdao, 266109, China.
Mei HuEnergy-Rich Compounds Production by Photosynthetic Carbon Fixation Research Center, Shandong Provincial Key Laboratory of Microbial Resource Exploration and Innovative Utilization, College of Life Sciences, Qingdao Agricultural University, Qingdao, 266109, China.
Hengrui XuEnergy-Rich Compounds Production by Photosynthetic Carbon Fixation Research Center, Shandong Provincial Key Laboratory of Microbial Resource Exploration and Innovative Utilization, College of Life Sciences, Qingdao Agricultural University, Qingdao, 266109, China.
Yafei DuEnergy-Rich Compounds Production by Photosynthetic Carbon Fixation Research Center, Shandong Provincial Key Laboratory of Microbial Resource Exploration and Innovative Utilization, College of Life Sciences, Qingdao Agricultural University, Qingdao, 266109, China.
Changxing SunEnergy-Rich Compounds Production by Photosynthetic Carbon Fixation Research Center, Shandong Provincial Key Laboratory of Microbial Resource Exploration and Innovative Utilization, College of Life Sciences, Qingdao Agricultural University, Qingdao, 266109, China.
Lingfei KongEnergy-Rich Compounds Production by Photosynthetic Carbon Fixation Research Center, Shandong Provincial Key Laboratory of Microbial Resource Exploration and Innovative Utilization, College of Life Sciences, Qingdao Agricultural University, Qingdao, 266109, China.
Yu LuoEnergy-Rich Compounds Production by Photosynthetic Carbon Fixation Research Center, Shandong Provincial Key Laboratory of Microbial Resource Exploration and Innovative Utilization, College of Life Sciences, Qingdao Agricultural University, Qingdao, 266109, China.
Xiaoyu LiuEnergy-Rich Compounds Production by Photosynthetic Carbon Fixation Research Center, Shandong Provincial Key Laboratory of Microbial Resource Exploration and Innovative Utilization, College of Life Sciences, Qingdao Agricultural University, Qingdao, 266109, China.
Jianming YangEnergy-Rich Compounds Production by Photosynthetic Carbon Fixation Research Center, Shandong Provincial Key Laboratory of Microbial Resource Exploration and Innovative Utilization, College of Life Sciences, Qingdao Agricultural University, Qingdao, 266109, China. yjming888@126.com.
Bo LiangEnergy-Rich Compounds Production by Photosynthetic Carbon Fixation Research Center, Shandong Provincial Key Laboratory of Microbial Resource Exploration and Innovative Utilization, College of Life Sciences, Qingdao Agricultural University, Qingdao, 266109, China. liangbo@qau.edu.cn.

Funding

National Natural Science Foundation of China 22278233National Natural Science Foundation of China 22378222Natural Science Foundation of Shandong Province ZR2025MS127
6 · The paper itself

Abstract

background3-Hydroxypropionic acid (3-HP) is a promising C3 platform chemical with wide industrial applications. However, its microbial production remains limited by insufficient intracellular malonyl-CoA availability and metabolic imbalance.

resultIn this study, we systematically engineered Escherichia coli for enhanced 3-HP biosynthesis. The malonate assimilation genes (matB, smatPQM) and 3-HP biosynthesis gene (mcr) were chromosomally integrated using CRISPR/Cas9, resulting in a plasmid-free, antibiotic-free strain (WYY04) that produced 21.97 mM 3-HP, 0.51-fold higher than the plasmid-based system. Further improvement was achieved by CRISPRi-mediated repression of fatty acid biosynthesis genes (fabD, fabF), increasing 3-HP titer by 66%. Introduction of a malonyl-CoA-responsive FapR/fapO biosensor enabled dynamic regulation of mcr expression, enhancing 3-HP production by 59%. Through all these above engineering, the 3-HP production of the strain WYY19 increased by 2.29 times compared to that of the plasmid-expressing system. Under optimized fermentation conditions, the final engineered strain WYY19 produced 42.22 g/L 3-HP with the specific productivity of 0.69 g/g and 0.46 g/L/h from glucose and malonate in fed-batch bioreactor.

conclusionsThis study demonstrates a robust, genetically stable, and scalable microbial platform for 3-HP biosynthesis.

Indexed as

Escherichia coliGlucoseLactic AcidMalonatesMetabolic EngineeringCRISPR-Cas SystemsEscherichia coli ProteinsMalonyl Coenzyme AEscherichia coli ProteinsGlucosehydracrylic acidLactic AcidMalonatesmalonic acidMalonyl Coenzyme A3-HP productionCRISPRi-mediated repressionGenomic integrationGlucose and malonateMalonyl-CoA biosensorMicrobial cell factory

Identifiers

PMID41877120
PMCPMC13134296

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.