Evidence map›Paper›PMID 41876492›Full record

ArticleTranslational psychiatry2026

Explainable drug side effect prediction in central neural system via biologically informed graph neural network.

Tongtong Huang, Ko-Hong Lin, Rodrigo Machado-Vieira, Jair C Soares, Xiaoqian Jiang, Yejin Kim

Abstract read
In one paragraph

Article in Translational psychiatry, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Pathway-guided architectures for interpretable AI in biological research.Computational and structural biotechnology journal · 2025
    Review
  2. Databases of ligand-binding pockets and protein-ligand interactions.Computational and structural biotechnology journal · 2024
    Review
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Tongtong HuangMcWilliams School of Biomedical Informatics, UTHealth, Houston, TX, US.ORCID http://orcid.org/0000-0002-4007-8991
Ko-Hong LinMcWilliams School of Biomedical Informatics, UTHealth, Houston, TX, US.
Rodrigo Machado-VieiraDepartment of Psychiatry and Behavioral Sciences, McGovern Medical School, UTHealth, Houston, TX, US.ORCID http://orcid.org/0000-0002-4830-1190
Jair C SoaresDepartment of Psychiatry and Behavioral Sciences, McGovern Medical School, UTHealth, Houston, TX, US.ORCID http://orcid.org/0000-0002-5466-5628
Xiaoqian JiangMcWilliams School of Biomedical Informatics, UTHealth, Houston, TX, US.ORCID http://orcid.org/0000-0001-9933-2205
Yejin KimMcWilliams School of Biomedical Informatics, UTHealth, Houston, TX, US. Yejin.Kim@uth.tmc.edu.

Funding

Data-driven Subtypes of Alzheimer's disease progression for targeted treatmentR01AG084637 · NIA · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI Xiaoqian Jiang, Yejin Kim · 2024 to 2026
$2.3M
Harmonizing multiple clinical trials for Alzheimer's disease to investigate differential responses to treatment via federated counterfactual learningR01AG082721 · NIA · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI Xiaoqian Jiang, Yejin Kim · 2023 to 2026
$2.0M
Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) R01AG066749Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) R01AG082721Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) R01AG084637Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) R01LM013712Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) R01LM014520Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) U01AG079847Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) U01CA274576Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) U24AG098157National Science Foundation (NSF) #2124789NIA NIH HHS R01 AG082721NIA NIH HHS R01 AG084637
6 · The paper itself

Abstract

The early detection of potential side effects (SEs) is a critical yet formidable challenge within the realms of drug development and patient healthcare management. Conventional in-vitro or in-vivo approaches for SE detection are often not feasible to scale during the preclinical phase for numerous drug candidates. Innovations in explainable artificial intelligence offer the prospect of early detection of potential SEs for novel therapeutics prior to their release in the market, as well as the explication of the underlying biological mechanisms. In this context, we present a novel biologically informed graph-based model, called HHAN-DSI, which capitalizes on multimodal interactions among molecular entities. Applied within the domain of the central nervous system (CNS) - the organ system associated with the largest number of SEs - our model demonstrates its capability to reveal previously unrecognized SEs of various psychiatric drugs. Moreover, HHAN-DSI elucidates the associated biological mechanisms, delineating an intricate network of genes, biological functions, drugs, and SEs.

Indexed as

Central Nervous SystemGraph Neural NetworksAnimalsHumans

Identifiers

PMID41876492
PMCPMC13040068

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.