Evidence map›Paper›PMID 41873971›Full record

ArticleApplied and environmental microbiology2026

Comparative physiological and genomic characterization of a novel

Zachary Flinkstrom, Kristopher A Hunt, Britt Abrahamson, Pierce Harvell, Xiangpeng Li, James Wilson, Zachary S Cooper, Jacob J Valenzuela, Nitin S Baliga, David A Stahl and 2 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Applied and environmental microbiology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Zachary FlinkstromDepartment of Civil and Environmental Engineering, University of Washington, Seattle, Washington, USA.ORCID 0000-0002-0596-6416
Kristopher A HuntDepartment of Civil and Environmental Engineering, University of Washington, Seattle, Washington, USA.
Britt AbrahamsonDepartment of Civil and Environmental Engineering, University of Washington, Seattle, Washington, USA.
Pierce HarvellSchool of Biological Sciences, Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, USA.
Xiangpeng LiSchool of Biological Sciences, Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, USA.
James WilsonInstitute for Systems Biology, Seattle, Washington, USA.
Zachary S CooperInstitute for Systems Biology, Seattle, Washington, USA.
Jacob J ValenzuelaInstitute for Systems Biology, Seattle, Washington, USA.
Nitin S BaligaInstitute for Systems Biology, Seattle, Washington, USA.ORCID 0000-0001-9157-5974
David A StahlDepartment of Civil and Environmental Engineering, University of Washington, Seattle, Washington, USA.
Wei QinSchool of Biological Sciences, Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, USA.ORCID 0000-0003-0895-0126
Mari-Karoliina H WinklerDepartment of Civil and Environmental Engineering, University of Washington, Seattle, Washington, USA.

Funding

ENIGMA-Ecosystems and Networks Integrated with Genes and Molecular Assemblies, a Science Focus Area Program at Lawrence Berkeley National Laboratory DE-AC02-05CH11231Provost's Summer Undergraduate Research and Creative Activity Fellowship at the University of Oklahoma Provost's Summer Undergraduate Research and Creative Activity FellowshipUniversity of Illinois Urbana-Champaign and University of Oklahoma Startup fundsU.S. Department of Energy DE-SC0020356US Department of Energy Early Career Research Program DE-SC0025455
6 · The paper itself

Abstract

Nitrite-oxidizing bacteria (NOB) represent a crucial node in the global nitrogen cycle. By catalyzing the second step of nitrification-the oxidation of nitrite to nitrate to generate energy for growth-NOB activity controls the fate of nitrite (NO

Indexed as

Genome, BacterialNitratesNitrobacterSoil MicrobiologyNitritesOxidation-ReductionPhylogenyNitratesNitritescomparative genomicskineticsnitrate toxicitynitrificationnitrite-oxidizing bacterianitrite toxicityNitrobacternitrous oxide

Identifiers

PMID41873971
PMCPMC13101473

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.