Evidence map›Paper›PMID 41872259›Full record

ArticleScientific data2026

A chromosomal-level genome assembly of Phoxinus grumi (Cypriniformes: Leuciscidae).

Jia Wang, Hongxiong Chang, Ping Yang, Xin Wang, Xinyang Li, Yuqing He, Minghui Gao, Wei Guo

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PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jia Wang *Xinjiang Key Laboratory for Ecological Adaptation and Evolution of Extreme Environment Organisms, College of Life Sciences, Xinjiang Agricultural University, Urumqi, 830052, China. wangjia365@xjau.edu.cn.
Hongxiong Chang *Xinjiang Key Laboratory for Ecological Adaptation and Evolution of Extreme Environment Organisms, College of Life Sciences, Xinjiang Agricultural University, Urumqi, 830052, China.
Ping YangXinjiang Key Laboratory for Ecological Adaptation and Evolution of Extreme Environment Organisms, College of Life Sciences, Xinjiang Agricultural University, Urumqi, 830052, China.
Xin WangXinjiang Key Laboratory for Ecological Adaptation and Evolution of Extreme Environment Organisms, College of Life Sciences, Xinjiang Agricultural University, Urumqi, 830052, China.
Xinyang LiXinjiang Key Laboratory for Ecological Adaptation and Evolution of Extreme Environment Organisms, College of Life Sciences, Xinjiang Agricultural University, Urumqi, 830052, China.
Yuqing HeXinjiang Key Laboratory for Ecological Adaptation and Evolution of Extreme Environment Organisms, College of Life Sciences, Xinjiang Agricultural University, Urumqi, 830052, China.
Minghui GaoXinjiang Key Laboratory for Ecological Adaptation and Evolution of Extreme Environment Organisms, College of Life Sciences, Xinjiang Agricultural University, Urumqi, 830052, China.
Wei GuoXinjiang Key Laboratory for Ecological Adaptation and Evolution of Extreme Environment Organisms, College of Life Sciences, Xinjiang Agricultural University, Urumqi, 830052, China. guowei612@xjau.edu.cn.

Funding

China Posstdoctoral Science Foundation 339494Xinjiang Key Laboratory for Ecological Adaptation and Evolution of Extreme Environment Organisms KFKT2402
6 · The paper itself

Abstract

The Turpan minnow (Phoxinus grumi) is a small endemic fish species inhabiting the extreme environment of the Turpan Basin in Xinjiang, China, holding significant value for evolutionary and conservation biology research. However, the absence of a high-quality reference genome has severely constrained studies on its adaptive evolution and conservation genetics, in stark contrast to the available chromosome-level genomes of its congeners, such as Phoxinus phoxinus. A total of 240.38 Gb of sequencing data was generated in this study, comprising 44.12Gb (53.35×) of PacBio HiFi reads, 50.36 Gb (60.90×) of Illumina reads, 120.59 Gb (133.95×) of Hi-C data and 25.31 Gb of RNA sequencing data, which enabled the successful assembly of a chromosome-level genome for P. grumi. The assembled genome has a total size of 900.41 Mb, with 97.58% of the sequences anchored onto 25 chromosomes. The contig N50 and scaffold N50 reached 17.52 Mb and 34.99 Mb, respectively. BUSCO assessment indicated a genome completeness of 98.1%. We predicted a total of 24,224 protein-coding genes, of which 90.8% were functionally annotated. This high-quality reference genome will serve as a key genetic resource for in-depth exploration of the environmental adaptation mechanisms and species conservation of P. grumi.

Indexed as

ChromosomesCypriniformesGenomeAnimalsChina

Identifiers

PMID41872259
PMCPMC13172473

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