Evidence map›Paper›PMID 41870021›Full record

ArticleACS synthetic biology2026

Quantitative Dissection of Agrobacterium Virulence to Generate a Synthetic Ti Plasmid.

Mitchell G Thompson, Liam D Kirkpatrick, Matthew J Szarzanowicz, Gina M Geiselman, Lucas M Waldburger, Allison N Pearson, Khanh M Vuu, Kasey Markel, Niklas F C Hummel, Matthew R Incha and 16 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in ACS synthetic biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Mitchell G ThompsonJoint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.
Liam D KirkpatrickJoint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.
Matthew J SzarzanowiczJoint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.
Gina M GeiselmanDOE Agile Biofoundry, 5885 Hollis Street, Fourth Floor, Emeryville, California 94608, United States.
Lucas M WaldburgerJoint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.
Allison N PearsonJoint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.
Khanh M VuuJoint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.
Kasey MarkelJoint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.ORCID 0000-0002-8285-3888
Niklas F C HummelJoint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.
Matthew R InchaDOE Agile Biofoundry, 5885 Hollis Street, Fourth Floor, Emeryville, California 94608, United States.ORCID 0000-0003-4122-3342
Dennis D SuazoDepartment of Plant and Microbial Biology, University of California, Berkeley, California 94720, United States.
Claudine TahminDepartment of Plant and Microbial Biology, University of California, Berkeley, California 94720, United States.
Ruoming CuiJoint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.
Shuying LiuJoint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.
Jasmine CevallosJoint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.
Hamreet PannuJoint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.
Nathan LappJoint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.
Di LiuDOE Agile Biofoundry, 5885 Hollis Street, Fourth Floor, Emeryville, California 94608, United States.
Jennifer W GinJoint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.
Yan ChenJoint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.
Christopher J PetzoldJoint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.ORCID 0000-0002-8270-5228
John M GladdenJoint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.ORCID 0000-0002-6985-2485
Jay D KeaslingJoint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.
Jeff H ChangDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331, United States.
Alexandra J WeisbergDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331, United States.ORCID 0000-0002-0045-1368
Patrick M ShihJoint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.ORCID 0000-0002-2119-3345

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

AgrobacteriumAgrobacterium tumefaciensPlant Tumor-Inducing PlasmidsPlasmidsGenetic EngineeringNicotianaTransformation, GeneticVirulenceAgrobacterium-mediated transformationfungal genetic engineeringin planta synthetic biologyplant genetic engineeringplant-microbe interactionsTi plasmid

Identifiers

PMID41870021
PMCPMC13097259

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.