Evidence map›Paper›PMID 41869010›Full record

ArticleImaging neuroscience (Cambridge, Mass.)2026

Multi-modal Monte Carlo MRI simulator of tissue microstructure.

Michiel Cottaar, Zhiyu Zheng, Karla Miller, Benjamin C Tendler, Saad Jbabdi

Abstract read
In one paragraph

Article in Imaging neuroscience (Cambridge, Mass.), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Michiel CottaarWellcome Centre for Integrative Neuroimaging (WIN), Centre for Functional Magnetic Resonance Imaging of the Brain (FMRIB), University of Oxford, UK.
Zhiyu ZhengWellcome Centre for Integrative Neuroimaging (WIN), Centre for Functional Magnetic Resonance Imaging of the Brain (FMRIB), University of Oxford, UK.
Karla MillerWellcome Centre for Integrative Neuroimaging (WIN), Centre for Functional Magnetic Resonance Imaging of the Brain (FMRIB), University of Oxford, UK.
Benjamin C TendlerWellcome Centre for Integrative Neuroimaging (WIN), Centre for Functional Magnetic Resonance Imaging of the Brain (FMRIB), University of Oxford, UK.
Saad JbabdiWellcome Centre for Integrative Neuroimaging (WIN), Centre for Functional Magnetic Resonance Imaging of the Brain (FMRIB), University of Oxford, UK.

Funding

BRAIN CONNECTS: Center for Mesoscale ConnectomicsUM1NS132207 · NINDS · UNIVERSITY OF MINNESOTA · PI TANER AKKIN, Damien A Fair · 2023 to 2026
$12.5M
NINDS NIH HHS UM1 NS132207Wellcome Trust
6 · The paper itself

Abstract

Monte Carlo simulation of MRI signals is a powerful tool for modelling and quantifying tissue microstructure. While these methods have been used in MRI for decades, they typically focus on one aspect of microstructure and one type of MRI contrast at a time. In this paper, we present a new Monte Carlo MRI (MCMR) simulator for investigating the impact of tissue microstructure on arbitrary MRI sequences. A key feature of the proposed simulator is that substrates can incorporate multiple microstructural features (diffusion, T1/T2 relaxation, membrane permeability, local off-resonance fields, surface relaxation and magnetisation transfer) simultaneously. This provides a single forward model from tissue microstructure to MRI signals that captures a broad range of contrasts typically considered to be of different MRI "modalities". We validate the results of the simulator by reproducing previous findings in well-established sequences, namely diffusion-weighted MRI, magnetisation transfer imaging, and gradient and spin echo sequences. The simulator is fully open source and packaged along with detailed documentation and tutorials.

Indexed as

Diffusion-Weighted MRIMagnetic Resonance Imaging (MRI)Magnetic SusceptibilityMagnetisation TransferMicrostructural ImagingMonte Carlo simulations

Identifiers

PMID41869010
PMCPMC7618918

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.