Evidence map›Paper›PMID 41867170›Full record

ArticlemedRxiv : the preprint server for health sciences2026

Cultryx: Precision Diagnostic Stewardship for Blood Cultures Using Machine Learning.

Nicholas P Marshall, Wenyuan Chen, Fatemeh Amrollahi, Fateme Nateghi Haredasht, Manoj V Maddali, Stephen P Ma, Aydin Zahedivash, Kameron C Black, Amy Chang, Stanley C Deresinski and 4 more

Abstract readPreprint
In one paragraph

Article in medRxiv : the preprint server for health sciences, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Nicholas P MarshallDivision of Pediatric Infectious Diseases, Department of Pediatrics, School of Medicine, Stanford University, Palo Alto, California, USA.ORCID 0009-0003-6051-5890
Wenyuan ChenDivision of Computational Medicine, Stanford University, Stanford, California, USA.ORCID 0009-0003-9341-6485
Fatemeh AmrollahiDivision of Computational Medicine, Stanford University, Stanford, California, USA.ORCID 0009-0009-6617-0241
Fateme Nateghi HaredashtDivision of Computational Medicine, Stanford University, Stanford, California, USA.ORCID 0000-0002-8874-8835
Manoj V MaddaliDivision of Pulmonary and Critical Care, Department of Medicine, School of Medicine, Stanford University, Stanford, California, USA.ORCID 0000-0001-5149-0247
Stephen P MaDivision of Hospital Medicine, Department of Medicine, School of Medicine, Stanford University, Stanford, California, USA.ORCID 0000-0003-3738-9569
Aydin ZahedivashDivision of Clinical Informatics, Department of Pediatrics, School of Medicine, Stanford University, Palo Alto, California, USA.ORCID 0000-0001-6835-1139
Kameron C BlackDivision of Clinical Informatics, Department of Pediatrics, School of Medicine, Stanford University, Palo Alto, California, USA.ORCID 0000-0002-3696-4050
Amy ChangDivision of Infectious Diseases and Geographic Medicine, Department of Medicine, School of Medicine, Stanford University, Stanford, California, USA.
Stanley C DeresinskiDivision of Infectious Diseases and Geographic Medicine, Department of Medicine, School of Medicine, Stanford University, Stanford, California, USA.
Mary K GoldsteinDepartment of Health Policy, School of Medicine, Stanford University, Stanford, California, USA.ORCID 0000-0001-7256-5746
Steven M AschDivision of Primary Care and Population Health, Department of Medicine, School of Medicine, Stanford University, Stanford, California, USA.ORCID 0000-0001-5838-5335
Niaz BanaeiDivision of Infectious Diseases and Geographic Medicine, Department of Medicine, School of Medicine, Stanford University, Stanford, California, USA.ORCID 0000-0001-8501-3000
Jonathan H ChenDivision of Computational Medicine, Stanford University, Stanford, California, USA.

Funding

Stanford Center for Clinical and Translational Research and EducationUM1TR004921 · NCATS · STANFORD UNIVERSITY · PI MANISHA DESAI, DEAN W FELSHER · 2024 to 2026
$30.1M
Center for Undiagnosed Diseases at StanfordU01NS134358 · NINDS · STANFORD UNIVERSITY · PI Jonathan Adam Bernstein, HOLLY K TABOR · 2023 to 2026
$3.1M
NCATS NIH HHS UM1 TR004921NINDS NIH HHS U01 NS134358
6 · The paper itself

Abstract

Background: The 2024 blood culture bottle shortage brought diagnostic resource allocation to the forefront, reflecting persistent, foundational challenges with low-value testing and empiric treatment approaches under clinical uncertainty. Objective: To determine whether a machine learning approach using electronic medical record data can predict bacteremia more effectively than existing systems and practices to guide diagnostic testing and empiric treatment strategies. Methods: In a retrospective cohort of 101,812 adult emergency department encounters (2015-2025), we first established an idealized cognitive baseline by evaluating physician and generative AI (GPT-5) application of the professional society-endorsed Fabre framework on a validation subset. We then trained an XGBoost model (Cultryx) on the full cohort to predict bacteremia, benchmarking its performance against real-world clinical heuristics (SIRS, Shapiro Rule). Results: For the idealized baseline, physicians applying the Fabre framework achieved 95.7% sensitivity, but GPT-5 automation failed to replicate this standard (71.6% sensitivity). In real-world benchmarking, Cultryx outperformed all clinical heuristics (AUROC 0.810). SIRS lacked specificity (41.2%), driving diagnostic overuse, while the Shapiro Rule lacked sensitivity (70.2%), missing ~30% of bacteremia cases. In contrast, when calibrated to a strict 95% sensitivity target, Cultryx achieved the highest culture volume deferral rate (26.2%, deferring ~15,872 bottles with predicted negative results) while maintaining a 98.9% negative predictive value. Cultryx Conclusions: Machine learning provides a superior, data-driven alternative to mainstream clinical heuristics for predicting bacteremia. By maximizing culture deferment without compromising pathogen detection, Cultryx can conserve diagnostic resources, reduce unnecessary empiric antibiotic exposure, and systematically elevate patient safety.

Indexed as

Antimicrobial Resistance and Stewardshipbacteremia predictionblood culture stewardshipclinical decision supportclinical informaticsClinical Practice and Policydiagnostic stewardshipelectronic health recordInfection Control and Hospital Epidemiologylarge language modelmachine learningresource conservation

Identifiers

PMID41867170
PMCPMC13004107

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.