Evidence map›Paper›PMID 41861242›Full record

ReviewAnnual review of biochemistry2026

The Promoter-Proximal Pause: A Decision Point Governing RNA Polymerase II Fate.

Usman Hyder, David L Bentley

Abstract readReview
In one paragraph

Review in Annual review of biochemistry, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Targeting CDKs in the RNAPII transcription cycle.Nature reviews. Drug discovery · 2026
    Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Usman HyderDepartment of Biochemistry and Molecular Genetics and RNA Bioscience Initiative, University of Colorado, Anschutz Medical Campus, Aurora, Colorado, USA; email: david.bentley@cuanschutz.edu.
David L BentleyDepartment of Biochemistry and Molecular Genetics and RNA Bioscience Initiative, University of Colorado, Anschutz Medical Campus, Aurora, Colorado, USA; email: david.bentley@cuanschutz.edu.

Funding

Coupling of transcription elongation and termination with pre-mRNA processingR35GM144336 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI DAVID L BENTLEY · 2022 to 2026
$2.5M
Exploiting Oncogenic Chromatin Regulators in Cancer Initiation and ProgressionK00CA264296 · NCI · UNIVERSITY OF COLORADO DENVER · PI Usman Hyder · 2024 to 2026
$295k
NCI NIH HHS K00 CA264296NIGMS NIH HHS R35 GM144336
6 · The paper itself

Abstract

A signature feature of transcription on most genes in multicellular animals is that RNA polymerase II (RNAPII) piles up approximately 50 bases downstream of the start site at the promoter-proximal pause (PPP). Promoter-proximal pausing is controlled by positive and negative elongation factors that associate with RNAPII. There are two major outcomes for promoter-proximally paused RNAPII complexes: release into the gene body and premature termination. Here we discuss how RNAPII dynamics at the PPP function in a quality control checkpoint and in regulation of RNAPII flux through genes. We propose a pause release-attenuation model to describe RNAPII dynamics at the PPP.

Indexed as

Promoter Regions, GeneticRNA Polymerase IITranscription, GeneticAnimalsHumansRNA Polymerase IIpause releasepausingpremature terminationRNA polymerase IItranscription elongation

Identifiers

PMID41861242
PMCPMC13660995

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.