Evidence map›Paper›PMID 41859238›Full record

ArticleISME communications2026

Upwelling periodically disturbs the ecological assembly of microbial communities in Lake Ontario.

Augustus Pendleton, Mathew Wells, Marian L Schmidt

Abstract read
In one paragraph

Article in ISME communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Novel AfricanJournal of virology · 2026
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Augustus PendletonDepartment of Microbiology, Cornell University, 123 Wing Dr, Ithaca 14850, NY, United States.
Mathew WellsDepartment of Physical and Environmental Sciences, University of Toronto Scarborough, 1065 Military Trail, Toronto M1C 1A4, ON, Canada.
Marian L SchmidtDepartment of Microbiology, Cornell University, 123 Wing Dr, Ithaca 14850, NY, United States.ORCID https://orcid.org/0000-0002-2866-4496

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Laurentian Great Lakes hold 21% of the world's surface freshwater and supply drinking water to nearly 40 million people. We provide the first evidence that wind-driven upwelling restructures microbial communities in Lake Ontario, with its effects sustained and redistributed by an internal Kelvin wave propagating along the shoreline. We combine 16S rRNA metabarcoding, absolute abundance quantification via flow cytometry, and hydrodynamic profiling to link physical processes to community composition. While thermal stratification organizes microbial communities by depth and season, this vertical structure arises from contrasting mechanisms: homogenizing selection in surface waters and dispersal limitation and drift in the hypolimnion. Kelvin wave-driven upwelling disrupts this scaffold, displacing rare taxa into the surface and creating novel coastal communities predicted to be enriched in methane oxidation and sulfur metabolism genes-functional traits absent elsewhere in the lake. We observed a Kelvin wave lasting over two weeks and propagating eastward at ~60 km day

Indexed as

biodiversitycommunity assemblyGreat Lakeshydrodynamicsmetacommunitymicrobial communitiesupwelling

Identifiers

PMID41859238
PMCPMC12998230

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.