Evidence map›Paper›PMID 41859030›Full record

ArticleClinical and translational radiation oncology2026

Leveraging large language models to populate structured clinical case report forms from unstructured medical notes in radiation oncology.

Marcel Nachbar, Nianzi Yi, Marcel Büttner, Cihan Gani, Maximilian Niyazi, Augusto Garcia-Agundez, Carsten Eickhoff, Daniela Thorwarth

Abstract read
In one paragraph

Article in Clinical and translational radiation oncology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Large language models for scalable standardization in radiation oncology.Physics and imaging in radiation oncology · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Marcel NachbarSection for Biomedical Physics, Department of Radiation Oncology, University Hospital and Medical Faculty, Eberhard Karls University Tübingen, Hoppe-Seyler-Str. 3 72076, Tübingen, Germany.
Nianzi YiInstitute for Bioinformatics and Medical Informatics, Eberhard-Karls-Universität Tübingen, Tübingen, Germany.
Marcel BüttnerDepartment of Radiation Oncology, University Hospital Tübingen, Tübingen, Germany.
Cihan GaniDepartment of Radiation Oncology, University Hospital Tübingen, Tübingen, Germany.
Maximilian NiyaziDepartment of Radiation Oncology, University Hospital Tübingen, Tübingen, Germany.
Augusto Garcia-AgundezUniversity of California San Francisco, CA, United States.
Carsten EickhoffInstitute for Bioinformatics and Medical Informatics, Eberhard-Karls-Universität Tübingen, Tübingen, Germany.
Daniela ThorwarthSection for Biomedical Physics, Department of Radiation Oncology, University Hospital and Medical Faculty, Eberhard Karls University Tübingen, Hoppe-Seyler-Str. 3 72076, Tübingen, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background and purpose: Large language models (LLMs) have shown growing potential for clinical text processing, but their systematic application in radiation oncology-especially for non-English clinical documentation-remains underexplored. This study investigated whether pretrained LLMs can automatically extract, analyze, and structure radiotherapy-relevant information from routine unstructured medical notes, with the goal of supporting automated population of electronic case report forms (eCRFs). Materials and methods: This study examined prostate cancer patients treated with the MR-Linac, for whom ground truth data exist in the MOMENTUM database. A total of 100 patients were included, with 90 used for prompt development and 10 for independent testing. Medical notes were extracted, anonymized, and categorized by time points. The Llama-3.1-8b model was used, with prompts designed using chain-of-thought (CoT) logic with five in-context examples. The model output was post-processed, and extracted data was compared against ground truth. Results: Medical notes were successfully processed, with predicted values generated in an average time of 16 s per note. The LLM achieved matching accuracies of 83.6% and 83.8% on the development and testing datasets. Analysis revealed that the model disagreed with specific values in 8.1% of development dataset cases and 8.6% of testing dataset cases. An independent manual review before model evaluation showed approximately 7.5% of routinely collected test data did not match reviewed values, indicating inaccuracies in the routinely acquired ground truth. Conclusion: This study demonstrated the effectiveness of LLMs in structuring clinical data from medical non-English notes, with high accuracy in extracting and categorizing information. While multi-institutional validation is needed, the results indicate a significant healthcare impact through efficient data management, processing notes in 16 s, and accurately populating CRFs with minimal staff involvement.

Identifiers

PMID41859030
PMCPMC12996807

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.